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Revision 1416:3f7a36cd1d7e, 1.0 kB
(checked in by Nate Coraor <nate@bx.psu.edu>, 4 months ago)
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Buildbot setup also needs the directory creation glue.
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#!/bin/sh |
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cd `dirname $0` |
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LINKS=" |
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/depot/data2/galaxy/alignseq.loc |
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/depot/data2/galaxy/binned_scores.loc |
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/depot/data2/galaxy/encode_datasets.loc |
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/home/universe/linux-i686/HYPHY |
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/depot/data2/galaxy/liftOver.loc |
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/depot/data2/galaxy/maf_index.loc |
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/depot/data2/galaxy/maf_pairwise.loc |
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/depot/data2/galaxy/microbes/microbial_data.loc |
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/depot/data2/galaxy/phastOdds.loc |
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/depot/data2/galaxy/quality_scores.loc |
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/depot/data2/galaxy/regions.loc |
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/depot/data2/galaxy/taxonomy |
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/depot/data2/galaxy/twobit.loc |
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" |
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SAMPLES=" |
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datatypes_conf.xml.sample |
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" |
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DIRS=" |
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database |
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database/files |
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database/tmp |
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database/compiled_templates |
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database/job_working_directory |
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database/import |
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database/pbs |
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" |
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for link in $LINKS; do |
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echo "Linking $link" |
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ln -sf $link tool-data |
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done |
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for sample in $SAMPLES; do |
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file=`echo $sample | sed -e 's/\.sample$//'` |
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echo "Copying $sample to $file" |
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cp $sample $file |
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done |
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for dir in $DIRS; do |
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if [ ! -d $dir ]; then |
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echo "Creating $dir" |
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mkdir $dir |
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fi |
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done |
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python ./scripts/fetch_eggs.py all |
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Galaxy