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../
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1.axt
|
29.0 kB |
0:ae898a17920b |
2 years |
James Taylor <james@bx.psu.edu>:
Moving james-wsgi branch to new trunk.
|
|
1.bed
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4.1 kB |
336:58a2fbc66cbc |
1 year |
Jianbin He <jbhe@bx.psu.edu>:
change test data to smaller ones
|
|
1.customtrack
|
265 bytes |
654:854fcc7f4788 |
1 year |
Greg Von Kuster <greg@bx.psu.edu>:
Some test data I missed.
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|
1.fasta
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21.1 kB |
653:815684d0b377 |
1 year |
Greg Von Kuster <greg@bx.psu.edu>:
Added functional tests for sniffing and metadata settings on file upload. …
|
|
1.fastqsolexa
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418 bytes |
1340:1c3b45fb0562 |
6 months |
Greg Von Kuster <greg@bx.psu.edu>:
Requires config modification - Add Fastq sniffer, add support for …
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|
1.interval
|
234 bytes |
654:854fcc7f4788 |
1 year |
Greg Von Kuster <greg@bx.psu.edu>:
Some test data I missed.
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|
1.lav
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2.7 kB |
653:815684d0b377 |
1 year |
Greg Von Kuster <greg@bx.psu.edu>:
Added functional tests for sniffing and metadata settings on file upload. …
|
|
1.scf
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136.2 kB |
813:bc21193e39f2 |
1 year |
Greg Von Kuster <greg@bx.psu.edu>:
Deleted a huge emboss test data file that is not needed. Added binary, …
|
|
1.scf.zip
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53.6 kB |
813:bc21193e39f2 |
1 year |
Greg Von Kuster <greg@bx.psu.edu>:
Deleted a huge emboss test data file that is not needed. Added binary, …
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|
1.tabular
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99 bytes |
548:9cd4e95f6015 |
1 year |
Greg Von Kuster <greg@bx.psu.edu>:
Fixes for the grouping tool.
|
|
1.txt
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208 bytes |
261:2eb708eee9e3 |
2 years |
Greg Von Kuster <greg@bx.psu.edu>:
Added new Subtract Whole Query tool. Also some miscellaneous code …
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|
1.wig
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273 bytes |
653:815684d0b377 |
1 year |
Greg Von Kuster <greg@bx.psu.edu>:
Added functional tests for sniffing and metadata settings on file upload. …
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|
2.bed
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4.2 kB |
336:58a2fbc66cbc |
1 year |
Jianbin He <jbhe@bx.psu.edu>:
change test data to smaller ones
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|
2.fasta
|
0.7 kB |
771:7d8a91d721e3 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Version 5.0 of EMBOSS Antigenic tool.
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|
2.fastq
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255 bytes |
1340:1c3b45fb0562 |
6 months |
Greg Von Kuster <greg@bx.psu.edu>:
Requires config modification - Add Fastq sniffer, add support for …
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|
2.fastqsolexa
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181 bytes |
1375:1481b520d6dc |
5 months |
Greg Von Kuster <greg@bx.psu.edu>:
Cleanup for fastqsolexa data type converters. We are currently supporting …
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2.interval
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501 bytes |
1006:8dd39cf9e5be |
9 months |
Dan Blankenberg <dan@bx.psu.edu>:
Update test-data for wiggle to simple tool.
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2.lav
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390 bytes |
1334:0cf33730c91c |
6 months |
Greg Von Kuster <greg@bx.psu.edu>:
Cleaned up lav_to_bed a bit, added functional test. Removed old, unused …
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2.pep
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0.7 kB |
799:fab97053b0c8 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Adding EMBOSS tools version 5.0 for helixturnhelix, hmoment, iep infoseq …
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2.tabular
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120 bytes |
1615:2d7f872ddaf8 |
2 weeks |
Greg Von Kuster <greg@bx.psu.edu>:
Add functioal test baseline support for the repeat construct, more work …
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2.txt
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171 bytes |
261:2eb708eee9e3 |
2 years |
Greg Von Kuster <greg@bx.psu.edu>:
Added new Subtract Whole Query tool. Also some miscellaneous code …
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2.wig
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0.7 kB |
689:d8c153439301 |
1 year |
Greg Von Kuster <greg@bx.psu.edu>:
Fixed Bed.sniff() and changed all old bed / interval test data files to …
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2_mod.bed
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4.2 kB |
1587:0da612f8a78e |
3 weeks |
guru:
Added new functional tests to all gops tools using …
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2way.maf
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396.9 kB |
1529:ad3f61801a82 |
2 months |
guru:
Adding tools to fetch microsatellites and estimate their mutabilities.
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3.bed
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4.6 kB |
338:3dce51aece13 |
1 year |
Jianbin He <jbhe@bx.psu.edu>:
change test data to smaller ones
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|
3.fasta
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2.6 kB |
799:fab97053b0c8 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Adding EMBOSS tools version 5.0 for helixturnhelix, hmoment, iep infoseq …
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3.maf
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10.7 kB |
653:815684d0b377 |
1 year |
Greg Von Kuster <greg@bx.psu.edu>:
Added functional tests for sniffing and metadata settings on file upload. …
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3way.maf
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25.8 kB |
758:3c2d6faf0b08 |
1 year |
Guruprasad Anada <gua110@bx.psu.edu>:
Adding tool "Get Indel rates for 3-way alignments" under Regional …
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4.bed
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61 bytes |
751:358e1d669b64 |
1 year |
Greg Von Kuster <greg@bx.psu.edu>:
First pass at final phase of cleaning up approach to dynamic select lists. …
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4.bed.gz
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80 bytes |
813:bc21193e39f2 |
1 year |
Greg Von Kuster <greg@bx.psu.edu>:
Deleted a huge emboss test data file that is not needed. Added binary, …
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|
4.fasta
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397 bytes |
919:5ad3870d94b9 |
10 months |
Greg Von Kuster <greg@bx.psu.edu>:
Fixes for tabular_to_fasta and fasta_to_tabular tools - requires update to …
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4.maf
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19.6 kB |
338:3dce51aece13 |
1 year |
Jianbin He <jbhe@bx.psu.edu>:
change test data to smaller ones
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4_windows.bed
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25.3 kB |
752:ae2be727e562 |
1 year |
Guruprasad Anada <gua110@bx.psu.edu>:
Regional variation tools: Tool xmls, code files and test-data added for 4 …
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4_windows_2.bed
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25.3 kB |
1251:f71103a7c914 |
7 months |
Guruprasad Anada <gua110@bx.psu.edu>:
Fetch closest features tool revamped using IntervalTree? from bx.
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5.bed
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8.5 kB |
866:0f615894f092 |
10 months |
Dan Blankenberg <dan@bx.psu.edu>:
Decrease size of gops cluster test data.
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5.gff
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1.8 kB |
653:815684d0b377 |
1 year |
Greg Von Kuster <greg@bx.psu.edu>:
Added functional tests for sniffing and metadata settings on file upload. …
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5.gff3
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8.3 kB |
653:815684d0b377 |
1 year |
Greg Von Kuster <greg@bx.psu.edu>:
Added functional tests for sniffing and metadata settings on file upload. …
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5.maf
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180.4 kB |
425:cd6e253b68f1 |
1 year |
Dan Blankenberg <dan@bx.psu.edu>:
Change MAF stats tool to work on both user mafs and cached mafs.
Updated …
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6.bed
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0.6 kB |
240:61b76ca1adb1 |
2 years |
Jianbin He <jbhe@bx.psu.edu>:
update data for nj_tree_newrick aggregate test
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6.maf
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38.6 kB |
752:ae2be727e562 |
1 year |
Guruprasad Anada <gua110@bx.psu.edu>:
Regional variation tools: Tool xmls, code files and test-data added for 4 …
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6_feature_coverage.bed
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4.8 kB |
1291:8916369df120 |
6 months |
Guruprasad Anada <gua110@bx.psu.edu>:
Modified "feature coverage" tool under regional variation using …
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6_indels.tabular
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1.6 kB |
764:98c4d13dcc61 |
1 year |
Greg Von Kuster <greg@bx.psu.edu>:
Uncommented functional tests in some regVariation tools in preparation for …
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6_mask_cpg.maf
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38.6 kB |
752:ae2be727e562 |
1 year |
Guruprasad Anada <gua110@bx.psu.edu>:
Regional variation tools: Tool xmls, code files and test-data added for 4 …
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6_quality_filter.maf
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38.6 kB |
1081:66f5ca37b46d |
8 months |
Guruprasad Anada <gua110@bx.psu.edu>:
Some small changes to Quality Filter tool.
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|
7.bed
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5.4 kB |
338:3dce51aece13 |
1 year |
Jianbin He <jbhe@bx.psu.edu>:
change test data to smaller ones
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8.bed
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162 bytes |
697:c6e8db193257 |
1 year |
Greg Von Kuster <greg@bx.psu.edu>:
--
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8.tabular
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0.7 kB |
645:bd749b62be93 |
1 year |
Greg Von Kuster <greg@bx.psu.edu>:
More functional test cleanup, eliminated redundant tests, unused test …
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9.bed
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135 bytes |
917:344251dc800a |
10 months |
Greg Von Kuster <greg@bx.psu.edu>:
Fixes for bed_to_gff_converter.
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9_hg18.bed
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118 bytes |
689:d8c153439301 |
1 year |
Greg Von Kuster <greg@bx.psu.edu>:
Fixed Bed.sniff() and changed all old bed / interval test data files to …
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10.bed
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2.5 kB |
339:435026eafb6c |
1 year |
Jianbin He <jbhe@bx.psu.edu>:
add some data
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|
11.bed
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53.7 kB |
1028:8de1aadd43ed |
9 months |
Guruprasad Anada <gua110@bx.psu.edu>:
Adding tool to fetch closest upstream and downstream features for a given …
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|
12.bed
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250 bytes |
1463:66be239241bc |
4 months |
greg:
Fix for gops metadata param parser when strand column not included in …
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13.bed
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3.8 kB |
1476:77f8bf51b2ae |
3 months |
Greg Von Kuster <greg@bx.psu.edu>:
Better fix for interval_maf_to_merged_fasta when no strand column in …
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|
454.fasta
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3.0 kB |
1182:0a7b8caf38bf |
7 months |
Greg Von Kuster <greg@bx.psu.edu>:
More short read tool cleanup.
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454.qual
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6.1 kB |
1329:43015227f87d |
6 months |
Greg Von Kuster <greg@bx.psu.edu>:
Requires change to Galaxy config - fixed the way the File Format select …
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|
454_high_quality_hist.pdf
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6.8 kB |
1180:cb6e58a9ded4 |
7 months |
Greg Von Kuster <greg@bx.psu.edu>:
Some cleanup for short read tools, more coming shortly.
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454Length.txt
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104 bytes |
875:22b4f294c20d |
10 months |
Wen-Yu Chung <wychung@bx.psu.edu>:
remove a tool that require phred.
modified some xml files for better …
|
|
454Score.pdf
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9.9 kB |
1155:b4efb8917fb9 |
8 months |
Wen-Yu Chung <wychung@bx.psu.edu>:
update functional test for short read tools that generate pdf output.
|
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454Score.png
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3.8 kB |
1326:c85f3e649c95 |
6 months |
Wen-Yu Chung <wychung@bx.psu.edu>:
generate png file instead of pdf file in short read distribution tool.
add …
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a.tab
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0.8 kB |
1399:1f7617211b38 |
5 months |
Guruprasad Anada <gua110@bx.psu.edu>:
Rewrote "convert delimiters to tab" tool in python.
Modified "Concatenate …
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a.txt
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1.3 kB |
1399:1f7617211b38 |
5 months |
Guruprasad Anada <gua110@bx.psu.edu>:
Rewrote "convert delimiters to tab" tool in python.
Modified "Concatenate …
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|
aggregate_binned_scores_3.wig
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13.5 kB |
963:05ba99d58fa5 |
9 months |
Dan Blankenberg <dan@bx.psu.edu>:
Update aggregate scores in intervals tool to work on user provided wig …
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aggregate_binned_scores_in_intervals2.interval
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142 bytes |
689:d8c153439301 |
1 year |
Greg Von Kuster <greg@bx.psu.edu>:
Fixed Bed.sniff() and changed all old bed / interval test data files to …
|
|
aggregate_binned_scores_in_intervals3.out
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0.8 kB |
1003:7dea6b980414 |
9 months |
Dan Blankenberg <dan@bx.psu.edu>:
Fix a bug in aggregate scores tool where only one position/value was being …
|
|
aggregate_binned_scores_in_intervals.bed
|
23 bytes |
166:5d0c83434a1e |
2 years |
David C. King <dcking@bx.psu.edu>:
cleaned up tests and old script for aggregate(binned) scores
|
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aggregate_binned_scores_in_intervals.out
|
0.9 kB |
607:94adc6c889a3 |
1 year |
Greg Von Kuster <greg@bx.psu.edu>:
Bug fixes, enhancements (including a new test) for the …
|
|
annotation_profiler_1.out
|
0.8 kB |
1314:6500f36f7fae |
6 months |
Dan Blankenberg <dan@bx.psu.edu>:
Add more information to the Annotation Profiler output.
|
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annotation_profiler_2.out
|
1.1 kB |
1321:07a2c8a74842 |
6 months |
Dan Blankenberg <dan@bx.psu.edu>:
Add additional output to annotation profiler.
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axt_to_concat_fasta.dat
|
27.7 kB |
336:58a2fbc66cbc |
1 year |
Jianbin He <jbhe@bx.psu.edu>:
change test data to smaller ones
|
|
axt_to_fasta.dat
|
28.9 kB |
200:a5cfb2a49c7f |
2 years |
Jianbin He <jbhe@bx.psu.edu>:
change/add some data for testing
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|
B1.fa
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35.6 kB |
1506:26825f08d362 |
2 months |
Anton Nekrutenko <anton@bx.psu.edu>:
Forgot two test datasets
|
|
bed2gff_out.gff
|
0.6 kB |
917:344251dc800a |
10 months |
Greg Von Kuster <greg@bx.psu.edu>:
Fixes for bed_to_gff_converter.
|
|
blat_coverage_report_test1.out
|
70.5 kB |
1097:9c41416d37dc |
8 months |
Wen-Yu Chung <wychung@bx.psu.edu>:
add a tool and functional test data that parse BLAT output to a report …
|
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blat_coverage_report_test1.txt
|
9.3 kB |
1097:9c41416d37dc |
8 months |
Wen-Yu Chung <wychung@bx.psu.edu>:
add a tool and functional test data that parse BLAT output to a report …
|
|
blat_mapping_test1.out
|
199 bytes |
1137:02be4cef9029 |
8 months |
Wen-Yu Chung <wychung@bx.psu.edu>:
change space to tab in the wiggle format output.
|
|
blat_mapping_test1.txt
|
195 bytes |
1135:6a6d227b83df |
8 months |
Wen-Yu Chung <wychung@bx.psu.edu>:
sorry, hit the wrong button (want to click cancel but click ok …
|
|
blat_wrapper_test1.fa
|
4.3 kB |
980:ffa8ec58774f |
9 months |
Wen-Yu Chung <wychung@bx.psu.edu>:
BLAT wrapper for short read analysis.
include functional test data.
|
|
blat_wrapper_test1.out
|
9.3 kB |
980:ffa8ec58774f |
9 months |
Wen-Yu Chung <wychung@bx.psu.edu>:
BLAT wrapper for short read analysis.
include functional test data.
|
|
branchlength_fasta_in.dat
|
2.6 kB |
160:20d2a7282ed1 |
2 years |
Dan Blankenberg <dan@bx.psu.edu>:
Add HYPHY branch lengths tool.
|
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branchlength_out.dat
|
1.8 kB |
626:4938112befc1 |
1 year |
Jianbin He <jbhe@bx.psu.edu>:
data change for testing
|
|
build_ucsc_custom_track_out1.customtrack
|
0.7 kB |
1615:2d7f872ddaf8 |
2 weeks |
Greg Von Kuster <greg@bx.psu.edu>:
Add functioal test baseline support for the repeat construct, more work …
|
|
cat_wrapper_out1.bed
|
8.3 kB |
1615:2d7f872ddaf8 |
2 weeks |
Greg Von Kuster <greg@bx.psu.edu>:
Add functioal test baseline support for the repeat construct, more work …
|
|
cc.EarlyRepSeg.20051216.bed
|
20.2 kB |
0:ae898a17920b |
2 years |
James Taylor <james@bx.psu.edu>:
Moving james-wsgi branch to new trunk.
|
|
cf-gene2exon.dat
|
12.3 kB |
338:3dce51aece13 |
1 year |
Jianbin He <jbhe@bx.psu.edu>:
change test data to smaller ones
|
|
cf_maf2fasta.dat
|
14.0 kB |
1103:3f4e75eb1b5f |
8 months |
Dan Blankenberg <dan@bx.psu.edu>:
Update negative stranded MAF cooridinates to be displayed relative to …
|
|
cf_maf2fasta_concat.dat
|
2.2 kB |
1113:ea6aac6ca24f |
8 months |
Greg Von Kuster <greg@bx.psu.edu>:
Fixes for functional tests for several tools.
- Select list control …
|
|
cf_maf_limit_to_species.dat
|
8.1 kB |
626:4938112befc1 |
1 year |
Jianbin He <jbhe@bx.psu.edu>:
data change for testing
|
|
cf_maf_to_bed.dat
|
360 bytes |
574:65a9b7bf25f7 |
1 year |
Dan Blankenberg <dan@bx.psu.edu>:
Update test data for maf_to_bed and maf_thread_for_species.
|
|
changeCase_out1.tabular
|
136 bytes |
1170:5493d2140560 |
7 months |
Greg Von Kuster <greg@bx.psu.edu>:
Enhancements to changeCase tool, user can now select columns to convert.
|
|
changeCase_out2.tabular
|
4.1 kB |
1170:5493d2140560 |
7 months |
Greg Von Kuster <greg@bx.psu.edu>:
Enhancements to changeCase tool, user can now select columns to convert.
|
|
chrY1.bed
|
29.3 kB |
1291:8916369df120 |
6 months |
Guruprasad Anada <gua110@bx.psu.edu>:
Modified "feature coverage" tool under regional variation using …
|
|
chrY2.bed
|
26.2 kB |
1291:8916369df120 |
6 months |
Guruprasad Anada <gua110@bx.psu.edu>:
Modified "feature coverage" tool under regional variation using …
|
|
chrY_Coverage.bed
|
34.4 kB |
1291:8916369df120 |
6 months |
Guruprasad Anada <gua110@bx.psu.edu>:
Modified "feature coverage" tool under regional variation using …
|
|
closest_features.interval
|
100.6 kB |
1251:f71103a7c914 |
7 months |
Guruprasad Anada <gua110@bx.psu.edu>:
Fetch closest features tool revamped using IntervalTree? from bx.
|
|
closest_features_down.interval
|
50.3 kB |
1251:f71103a7c914 |
7 months |
Guruprasad Anada <gua110@bx.psu.edu>:
Fetch closest features tool revamped using IntervalTree? from bx.
|
|
closest_features_up.interval
|
50.3 kB |
1251:f71103a7c914 |
7 months |
Guruprasad Anada <gua110@bx.psu.edu>:
Fetch closest features tool revamped using IntervalTree? from bx.
|
|
convert_SOLiD_color2nuc_test1.out
|
0.6 kB |
1135:6a6d227b83df |
8 months |
Wen-Yu Chung <wychung@bx.psu.edu>:
sorry, hit the wrong button (want to click cancel but click ok …
|
|
convert_SOLiD_color2nuc_test1.txt
|
0.6 kB |
1135:6a6d227b83df |
8 months |
Wen-Yu Chung <wychung@bx.psu.edu>:
sorry, hit the wrong button (want to click cancel but click ok …
|
|
cor.tabular
|
205 bytes |
532:3a10d35f9668 |
1 year |
Greg Von Kuster <greg@bx.psu.edu>:
Bug correction and enhancements to cor.py (correlation tool).
|
|
cor_out.txt
|
38 bytes |
532:3a10d35f9668 |
1 year |
Greg Von Kuster <greg@bx.psu.edu>:
Bug correction and enhancements to cor.py (correlation tool).
|
|
customTrack1.bed
|
0.6 kB |
231:22ab72029e22 |
2 years |
Guruprasad Anada <gua110@bx.psu.edu>:
Made necessary modifications to /lib/galaxy/tools/init.py and added …
|
|
customTrack2.bed
|
10.6 kB |
231:22ab72029e22 |
2 years |
Guruprasad Anada <gua110@bx.psu.edu>:
Made necessary modifications to /lib/galaxy/tools/init.py and added …
|
|
DNAseHSS.dat
|
72.3 kB |
1613:342e8ebf1305 |
2 weeks |
Dan Blankenberg <dan@bx.psu.edu>:
Add a test for the sample analysis of retrieving genes flanked by DNAse …
|
|
dnds_inp.fasta
|
60.0 kB |
414:bb1122be8725 |
1 year |
Guruprasad Anada <gua110@bx.psu.edu>:
Adding HYPHY tool to compute dN/dS ratio.
|
|
dnds_out.dat
|
1.3 kB |
414:bb1122be8725 |
1 year |
Guruprasad Anada <gua110@bx.psu.edu>:
Adding HYPHY tool to compute dN/dS ratio.
|
|
dnds_out.tabular
|
1.3 kB |
901:6870f2f3d100 |
10 months |
Guruprasad Anada <gua110@bx.psu.edu>:
Minor modifications to HYPHY dN/dS tool.
Ran functional test and added new …
|
|
droPer1.bed
|
120 bytes |
336:58a2fbc66cbc |
1 year |
Jianbin He <jbhe@bx.psu.edu>:
change test data to smaller ones
|
|
droPer1.dat
|
234 bytes |
460:919bc0cc413b |
1 year |
Jianbin He <jbhe@bx.psu.edu>:
change some data for test
|
|
emboss_antigenic_out.tabular
|
0.7 kB |
771:7d8a91d721e3 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Version 5.0 of EMBOSS Antigenic tool.
|
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emboss_backtranseq_out.fasta
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1.7 kB |
772:87db104e6a3f |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
--
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emboss_banana_out.txt
|
11.5 kB |
772:87db104e6a3f |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
--
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emboss_biosed_out.fasta
|
0.6 kB |
772:87db104e6a3f |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
--
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emboss_btwisted_out.btwisted
|
233 bytes |
773:7ec847403e18 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Upgrading EMBOSS tools btwsited, cai, custom cai and chaos to version 5.0
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emboss_cai_out.cai
|
29 bytes |
773:7ec847403e18 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Upgrading EMBOSS tools btwsited, cai, custom cai and chaos to version 5.0
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emboss_charge_out.charge
|
7.0 kB |
774:55c25a50b623 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Upgrading EMBOSS tools charge, checktrans and chips to version 5.0
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emboss_chips_out.chips
|
44 bytes |
774:55c25a50b623 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Upgrading EMBOSS tools charge, checktrans and chips to version 5.0
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emboss_codcmp_out.codcmp
|
253 bytes |
786:2bfff93ede06 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Adding version 5.0 of EMBOSS tools dan degapseq descseq codcmp and …
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emboss_coderet_out.coderet
|
120 bytes |
907:08e2c7eecc64 |
10 months |
Greg Von Kuster <greg@bx.psu.edu>:
Added versions to EMBOSS tools, corrected tool ids in version 5 EMBOSS …
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emboss_compseq_out.compseq
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0.9 kB |
775:df76f90ad849 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Upgrading EMBOSS tools cirdna compseq and cpgreport to Version 5.0
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emboss_cpgreport_out1.gff
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0.8 kB |
797:0e17651f6c7f |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Adding EMBOSS v5 tools coderet cpgplot diffseq digest dotmatcher dotpath …
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emboss_cpgreport_out2.cpgreport
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0.7 kB |
775:df76f90ad849 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Upgrading EMBOSS tools cirdna compseq and cpgreport to Version 5.0
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emboss_cusp_out.cusp
|
2.4 kB |
776:bd7c6c4272ec |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Version 5.0 of EMBOSS tools cusp cutseq einverted.
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emboss_cutseq_out.fasta
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0.6 kB |
776:bd7c6c4272ec |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Version 5.0 of EMBOSS tools cusp cutseq einverted.
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emboss_dan_out.png
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4.4 kB |
786:2bfff93ede06 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Adding version 5.0 of EMBOSS tools dan degapseq descseq codcmp and …
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emboss_degapseq_out.fasta
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0.6 kB |
786:2bfff93ede06 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Adding version 5.0 of EMBOSS tools dan degapseq descseq codcmp and …
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emboss_descseq_out.fasta
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0.6 kB |
786:2bfff93ede06 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Adding version 5.0 of EMBOSS tools dan degapseq descseq codcmp and …
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emboss_einverted_out.einverted
|
1.8 kB |
776:bd7c6c4272ec |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Version 5.0 of EMBOSS tools cusp cutseq einverted.
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emboss_epestfind_out.epestfind
|
1.6 kB |
798:8ef24a3f8253 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Committing EMBOSS v5 tools: epestfind, est2genome extractseq freak fuzzpro …
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emboss_equicktandem_out.equicktandem
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0.6 kB |
777:a7cf1e7f9724 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Upgrading EMBOSS tools equicktandem, etandem and fuzznuc to version 5.0
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emboss_est2genome_out.est2genome
|
100 bytes |
798:8ef24a3f8253 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Committing EMBOSS v5 tools: epestfind, est2genome extractseq freak fuzzpro …
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emboss_etandem_out.table
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106 bytes |
777:a7cf1e7f9724 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Upgrading EMBOSS tools equicktandem, etandem and fuzznuc to version 5.0
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emboss_extractseq_out.fasta
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0.6 kB |
798:8ef24a3f8253 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Committing EMBOSS v5 tools: epestfind, est2genome extractseq freak fuzzpro …
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emboss_freak_out.freak
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10.4 kB |
798:8ef24a3f8253 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Committing EMBOSS v5 tools: epestfind, est2genome extractseq freak fuzzpro …
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emboss_fuzznuc_out.tabular
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1.3 kB |
777:a7cf1e7f9724 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Upgrading EMBOSS tools equicktandem, etandem and fuzznuc to version 5.0
|
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emboss_fuzzpro_out.tabular
|
1.3 kB |
798:8ef24a3f8253 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Committing EMBOSS v5 tools: epestfind, est2genome extractseq freak fuzzpro …
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emboss_fuzztran_out.tabular
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6.1 kB |
782:e637f887982b |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Version 5.0 for EMBOSS tools fuzztran, getorf and isochore
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emboss_garnier_out.tabular
|
3.3 kB |
798:8ef24a3f8253 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Committing EMBOSS v5 tools: epestfind, est2genome extractseq freak fuzzpro …
|
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emboss_geecee_out.geecee
|
42 bytes |
798:8ef24a3f8253 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Committing EMBOSS v5 tools: epestfind, est2genome extractseq freak fuzzpro …
|
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emboss_getorf_out.fasta
|
3.3 kB |
782:e637f887982b |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Version 5.0 for EMBOSS tools fuzztran, getorf and isochore
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emboss_helixturnhelix_out.tabular
|
68 bytes |
799:fab97053b0c8 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Adding EMBOSS tools version 5.0 for helixturnhelix, hmoment, iep infoseq …
|
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emboss_hmoment_out.hmoment
|
5.9 kB |
799:fab97053b0c8 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Adding EMBOSS tools version 5.0 for helixturnhelix, hmoment, iep infoseq …
|
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emboss_iep_out.iep
|
0.8 kB |
799:fab97053b0c8 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Adding EMBOSS tools version 5.0 for helixturnhelix, hmoment, iep infoseq …
|
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emboss_isochore_out.isochore
|
90 bytes |
782:e637f887982b |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Version 5.0 for EMBOSS tools fuzztran, getorf and isochore
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emboss_marscan_out.tabular
|
298 bytes |
800:eebd8cfc3ce1 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Committing EMBOSS v5.0 tools marscan maskfeat maskseq matcher megamerger …
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emboss_maskfeat_out.fasta
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0.6 kB |
800:eebd8cfc3ce1 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Committing EMBOSS v5.0 tools marscan maskfeat maskseq matcher megamerger …
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emboss_maskseq_out.fasta
|
0.6 kB |
800:eebd8cfc3ce1 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Committing EMBOSS v5.0 tools marscan maskfeat maskseq matcher megamerger …
|
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emboss_matcher_out.fasta
|
142 bytes |
800:eebd8cfc3ce1 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Committing EMBOSS v5.0 tools marscan maskfeat maskseq matcher megamerger …
|
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emboss_msbar_out.fasta
|
0.6 kB |
783:d7fe5e2ed4c6 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
EMBOSS tools upgrade to version 5.0 - msbar, needle and newcpgseek
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emboss_needle_out.score
|
111 bytes |
783:d7fe5e2ed4c6 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
EMBOSS tools upgrade to version 5.0 - msbar, needle and newcpgseek
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emboss_newcpgreport_out.newcpgreport
|
196 bytes |
801:2e5d0a2602b0 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Adding EMBOSS v5.0 newcpgreport noreturn patmatdb pepinfo pepnet pepwheel …
|
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emboss_newcpgseek_out.newcpgseek
|
232 bytes |
783:d7fe5e2ed4c6 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
EMBOSS tools upgrade to version 5.0 - msbar, needle and newcpgseek
|
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emboss_newseq_out.fasta
|
45 bytes |
785:12ecc30e18e2 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Upgrading EMBOSS tools newseq notseq nthseq to version 5.0
|
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emboss_noreturn_out.noreturn
|
0.7 kB |
801:2e5d0a2602b0 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Adding EMBOSS v5.0 newcpgreport noreturn patmatdb pepinfo pepnet pepwheel …
|
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emboss_notseq_out.fasta
|
0.6 kB |
785:12ecc30e18e2 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Upgrading EMBOSS tools newseq notseq nthseq to version 5.0
|
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emboss_nthseq_out.fasta
|
0.6 kB |
785:12ecc30e18e2 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Upgrading EMBOSS tools newseq notseq nthseq to version 5.0
|
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emboss_palindrome_out.palindrome
|
274 bytes |
786:2bfff93ede06 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Adding version 5.0 of EMBOSS tools dan degapseq descseq codcmp and …
|
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emboss_pasteseq_out.fasta
|
22.1 kB |
790:f850ebfb38a9 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Upgrading EMBOSS tools to version 5.0 - trimest trimseq wobble union water …
|
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emboss_patmatdb_out.tabular
|
0.8 kB |
907:08e2c7eecc64 |
10 months |
Greg Von Kuster <greg@bx.psu.edu>:
Added versions to EMBOSS tools, corrected tool ids in version 5 EMBOSS …
|
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emboss_pepcoil_out.pepcoil
|
140 bytes |
801:2e5d0a2602b0 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Adding EMBOSS v5.0 newcpgreport noreturn patmatdb pepinfo pepnet pepwheel …
|
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emboss_pepstats_out.pepstats
|
1.5 kB |
907:08e2c7eecc64 |
10 months |
Greg Von Kuster <greg@bx.psu.edu>:
Added versions to EMBOSS tools, corrected tool ids in version 5 EMBOSS …
|
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emboss_plotorf_out1.png
|
5.6 kB |
801:2e5d0a2602b0 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Adding EMBOSS v5.0 newcpgreport noreturn patmatdb pepinfo pepnet pepwheel …
|
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emboss_plotorf_out.png
|
5.6 kB |
801:2e5d0a2602b0 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Adding EMBOSS v5.0 newcpgreport noreturn patmatdb pepinfo pepnet pepwheel …
|
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emboss_polydot_out.png
|
5.4 kB |
801:2e5d0a2602b0 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Adding EMBOSS v5.0 newcpgreport noreturn patmatdb pepinfo pepnet pepwheel …
|
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emboss_prettyseq_out.prettyseq
|
2.1 kB |
790:f850ebfb38a9 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Upgrading EMBOSS tools to version 5.0 - trimest trimseq wobble union water …
|
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emboss_primersearch.fasta
|
329 bytes |
791:1b24376772ce |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
EMBOSS Version 5 for primersearch revseq seqmatchall sirna splitter …
|
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emboss_primersearch_out.primersearch
|
124 bytes |
791:1b24376772ce |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
EMBOSS Version 5 for primersearch revseq seqmatchall sirna splitter …
|
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emboss_revseq_out.fasta
|
0.6 kB |
791:1b24376772ce |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
EMBOSS Version 5 for primersearch revseq seqmatchall sirna splitter …
|
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emboss_seqmatchall_out.fasta
|
83 bytes |
791:1b24376772ce |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
EMBOSS Version 5 for primersearch revseq seqmatchall sirna splitter …
|
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emboss_seqret_out.fasta
|
0.6 kB |
802:18d1f76d56da |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Adding EMBOSS v5.0 tools seqret showfeat shuffleseq sigcleave sixpack …
|
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emboss_sigcleave_out.tabular
|
378 bytes |
802:18d1f76d56da |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Adding EMBOSS v5.0 tools seqret showfeat shuffleseq sigcleave sixpack …
|
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emboss_sirna_out.fasta
|
7.6 kB |
791:1b24376772ce |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
EMBOSS Version 5 for primersearch revseq seqmatchall sirna splitter …
|
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emboss_sixpack_out2.sixpack
|
7.5 kB |
802:18d1f76d56da |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Adding EMBOSS v5.0 tools seqret showfeat shuffleseq sigcleave sixpack …
|
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emboss_skipseq_out.fasta
|
0.6 kB |
802:18d1f76d56da |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Adding EMBOSS v5.0 tools seqret showfeat shuffleseq sigcleave sixpack …
|
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emboss_splitter_out.fasta
|
0.6 kB |
791:1b24376772ce |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
EMBOSS Version 5 for primersearch revseq seqmatchall sirna splitter …
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emboss_supermatcher_out.fasta
|
1.3 kB |
802:18d1f76d56da |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Adding EMBOSS v5.0 tools seqret showfeat shuffleseq sigcleave sixpack …
|
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emboss_syco_out.syco
|
7.0 kB |
802:18d1f76d56da |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Adding EMBOSS v5.0 tools seqret showfeat shuffleseq sigcleave sixpack …
|
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emboss_tranalign_out.fasta
|
2.3 kB |
791:1b24376772ce |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
EMBOSS Version 5 for primersearch revseq seqmatchall sirna splitter …
|
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emboss_transeq_out.fasta
|
247 bytes |
791:1b24376772ce |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
EMBOSS Version 5 for primersearch revseq seqmatchall sirna splitter …
|
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emboss_trimest_out.fasta
|
0.6 kB |
790:f850ebfb38a9 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Upgrading EMBOSS tools to version 5.0 - trimest trimseq wobble union water …
|
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emboss_trimseq_out.fasta
|
0.6 kB |
790:f850ebfb38a9 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Upgrading EMBOSS tools to version 5.0 - trimest trimseq wobble union water …
|
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emboss_union_out.fasta
|
0.6 kB |
790:f850ebfb38a9 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Upgrading EMBOSS tools to version 5.0 - trimest trimseq wobble union water …
|
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emboss_water_out.fasta
|
1.8 kB |
803:60f7907df288 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Committing EMBOSS v5.0 tools tcode textsearch tmap twofeat vectorstrip …
|
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emboss_water_out.score
|
109 bytes |
790:f850ebfb38a9 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Upgrading EMBOSS tools to version 5.0 - trimest trimseq wobble union water …
|
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emboss_wobble_out.png
|
9.2 kB |
803:60f7907df288 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Committing EMBOSS v5.0 tools tcode textsearch tmap twofeat vectorstrip …
|
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emboss_wobble_out.wobble
|
46 bytes |
790:f850ebfb38a9 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Upgrading EMBOSS tools to version 5.0 - trimest trimseq wobble union water …
|
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emboss_wordcount_out.wordcount
|
1.4 kB |
790:f850ebfb38a9 |
1 year |
Chinmay Rao <chinmay@bx.psu.edu>:
Upgrading EMBOSS tools to version 5.0 - trimest trimseq wobble union water …
|
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encode_1.bed
|
20.2 kB |
819:47f915f2b226 |
11 months |
Greg Von Kuster <greg@bx.psu.edu>:
Better error handling for gencode_partition tool, also added functional …
|
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eq-addvalue.dat
|
4.2 kB |
336:58a2fbc66cbc |
1 year |
Jianbin He <jbhe@bx.psu.edu>:
change test data to smaller ones
|
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eq-compute.dat
|
4.5 kB |
336:58a2fbc66cbc |
1 year |
Jianbin He <jbhe@bx.psu.edu>:
change test data to smaller ones
|
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eq-condense.dat
|
4.1 kB |
336:58a2fbc66cbc |
1 year |
Jianbin He <jbhe@bx.psu.edu>:
change test data to smaller ones
|
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eq-convert.dat
|
4.1 kB |
336:58a2fbc66cbc |
1 year |
Jianbin He <jbhe@bx.psu.edu>:
change test data to smaller ones
|
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eq-createinterval.dat
|
29 bytes |
0:ae898a17920b |
2 years |
James Taylor <james@bx.psu.edu>:
Moving james-wsgi branch to new trunk.
|
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eq-cut.dat
|
3.8 kB |
336:58a2fbc66cbc |
1 year |
Jianbin He <jbhe@bx.psu.edu>:
change test data to smaller ones
|
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eq-paste.dat
|
8.3 kB |
336:58a2fbc66cbc |
1 year |
Jianbin He <jbhe@bx.psu.edu>:
change test data to smaller ones
|
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eq-removebeginning.dat
|
3.8 kB |
336:58a2fbc66cbc |
1 year |
Jianbin He <jbhe@bx.psu.edu>:
change test data to smaller ones
|
|
eq-showbeginning.dat
|
0.6 kB |
336:58a2fbc66cbc |
1 year |
Jianbin He <jbhe@bx.psu.edu>:
change test data to smaller ones
|
|
eq-showtail.dat
|
0.6 kB |
336:58a2fbc66cbc |
1 year |
Jianbin He <jbhe@bx.psu.edu>:
change test data to smaller ones
|
|
Extract_features1_out.gff
|
477 bytes |
754:663ac60ca893 |
1 year |
Greg Von Kuster <greg@bx.psu.edu>:
Modified tools using the <select_options> tag approach for dynamic options …
|
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extract_genomic_dna.fa
|
20.0 kB |
899:330b599462c3 |
10 months |
Wen-Yu Chung <wychung@bx.psu.edu>:
add a section and tools for manipulating fasta file:
convert file between …
|
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extract_genomic_dna_out1.fasta
|
20.0 kB |
916:f |
Galaxy
