root/test-data/5.maf

Revision 425:cd6e253b68f1, 180.4 kB (checked in by Dan Blankenberg <dan@bx.psu.edu>, 1 year ago)

Change MAF stats tool to work on both user mafs and cached mafs.

Updated tests and test data for some tools.

Line 
1 ##maf version=1
2 a score=64549.0
3 s hg17.chr1     147962192 9 + 245522847 TCATTTAAT
4 s panTro1.chr1  129698808 9 + 229575298 TCATTTAAT
5 s mm5.chr3       65458475 7 - 160575607 --ATTTGAT
6 s rn3.chr2       68236843 7 - 258222147 --ATTTGAT
7 s canFam1.chr17  62929731 9 +  66886099 TTATTTGAT
8
9 a score=37247.0
10 s hg17.chr1     147962201 43 + 245522847 GACAATTTTCTGGCGCAAGGCTCGGGGCCCAGAGCCAGGGAGG
11 s panTro1.chr1  129698817 43 + 229575298 GACAATTTTCTGGCGCAAGGCTCGGGGCCCAGAGCCAGGGAGG
12 s mm5.chr3       65458482 43 - 160575607 GACAATCTTCTGACGCAAGGCTCGAGGCCCAGAGCCAGGTAGT
13 s rn3.chr2       68236850 43 - 258222147 GACAATCTTCTGACGCAAGGCTCGGGGCCCAGCGCCAGGGAGT
14 s canFam1.chr17  62929740 43 +  66886099 GACAATTTTCTGGCGCAAGGCTCGGGGCCCAGAACCAGGGAGG
15 s danRer1.chr10  19400803 43 +  25436222 GGCGCTCTGCTTGAGCACAGCTTTGGGTCGTGCGCTCTTCAAA
16
17 a score=1000.0
18 s hg17.chr1     147962244 1 + 245522847 G
19 s panTro1.chr1  129698860 1 + 229575298 G
20 s mm5.chr3       65458525 1 - 160575607 G
21 s rn3.chr2       68236893 1 - 258222147 G
22 s canFam1.chr17  62929783 1 +  66886099 G
23
24 a score=0.0
25 s hg17.chr1 147962244 3 + 245522847 GGC
26
27 a score=3000.0
28 s hg17.chr1     147962245 2 + 245522847 GC
29 s panTro1.chr1  129698861 2 + 229575298 GC
30 s mm5.chr3       65458526 2 - 160575607 GC
31 s rn3.chr2       68236894 2 - 258222147 GC
32 s canFam1.chr17  62929784 2 +  66886099 GC
33 s fr1.chrUn     290886762 2 + 349519338 GC
34
35 a score=18092.0
36 s hg17.chr1     147962247 26 + 245522847 TCAGGAGGTGGCGGGCCGGGGCC-----CAG
37 s panTro1.chr1  129698863 26 + 229575298 TCAGGAGGTGGCGGGCCAGGGCC-----CAG
38 s mm5.chr3       65458528 26 - 160575607 TCGGGGGGTGGGGGCCCGGGGCC-----CAG
39 s rn3.chr2       68236896 26 - 258222147 TCGGGGGGTGGGGGCCCGGGGCC-----CAG
40 s canFam1.chr17  62929786 26 +  66886099 TCGGGAGGTGGTGGGCCAGGGCC-----CAG
41 s fr1.chrUn     290886764 26 + 349519338 TGATGAGGAATCGAGTCCTGTGG-----CAG
42 s danRer1.chr10  19400846 31 +  25436222 TTAGCAGGTGAATCGCTAGCGTCGGTGTTAG
43
44 a score=219213.0
45 s hg17.chr1     147962273 178 + 245522847 GGCTGAGGCAGTGGGCGGCAGTCCATGGGCAGTAATGTACTTCTTGTAAGCCTCACGAATGATCTTGAAGGCTCGAGCAGTGGCATAGGGTATGTCTGTAACAGGGTCCCGGTATAGGGCTGGACGATGGGTCACTGGACAGACCTCACGAACAGGGACTTTTGGG---GGCCGCCCTTGG
46 s panTro1.chr1  129698889 178 + 229575298 GGCTGAGGCAGTGGGCGGCAGTCCATGGGCAGTAATGTACTTCTTGTAAGCCTCACGAATGATCTTGAAGGCTCGAGCAGTGGCATAGGGTATGTCTGTAACAGGGTCCCGGTATAGGGCTGGACGATGGGTCACTGGACAAACCTCACGAACAGGGACTTTTGGG---GGCCGCCCTTGG
47 s mm5.chr3       65458554 178 - 160575607 CGCCGAGGCGGTGGGTGGAAGTCCGTGGGCAGTGATGTACTTCTTGTACGCCTCACGGATGATCTTGAAGGCTCTAGCAGTGGCATAGGGTATGTCTGTAACAGGGTCCCGGTACAAAGCTGGACGGTGGGTCACTGGGCAGACCTCCCGCACCGGGACCTTCGGG---GGTCGCCCCTGG
48 s rn3.chr2       68236922 178 - 258222147 CGCTGAGGCAGTGGGTGGTAGTCCGTGGGCAGTGATGTACTTCTTGTACGCCTCACGGATGATCTTGAAGGCTCTAGCAGTGGCATAGGGTATGTCTGTAACAGGGTCCCGGTACAAAGCTGGACGGTGGGTCACTGGGCAGACCTCCCGAACAGGGACCTTTGGT---GGTCGCCCTTGG
49 s canFam1.chr17  62929812 178 +  66886099 GGCTGAGGCAGTGGGCGGCAGTCCGTGGGCAGTGATGTACTTCTTGTAGGCCTCACGGATGATCTTGAAGGCTCGAGCAGTGGCGTAGGGGATGTCTGTGACAGGGTCCCGGTACAGGGCTGGGCGATGGGTCACGGGGCAGACCTCCCGAACAGGGACCTTTGGG---GGCCGGCCTTGG
50 s fr1.chrUn     290886790 179 + 349519338 CTCCAGG--AGTGTTTGGGAAGCCGTGTGCAGCCACGTATTTACGGTAAGCTTCTCGGATGATGCGGAAGGCTCGTGCGTTAGCATAAGGTATGTCTGTGACCGGATCTCTGTACAGTGCGATCTTATGCGTGACGGGACAAATCTCCTGGACGGGCAGCTGAGGGCTCGGCTGCCCCTTG
51 s danRer1.chrUn 128306408 178 - 367113659 GGATGGGCCAGTGCAGGGCAGGCCATGAGCAGCCACATACTTCTTATAGGCCTCCCGAATTATCCTGAAGGCCTGTACATTAGCGTAAGGAATGTCAGTGATGGGGTCCCGGTAGAGCGCAGGCTTATGGGTAACAGGACAGACCTCCTGGACAGGTACTCGAGGA---GCAGGCGACTGG
52
53 a score=84843.0
54 s hg17.chr1     147962451 56 + 245522847 GGGAACCATTCCTCGAAAGTTGCATCATCACTAAAAGTGATGAAGGTACGTGAGCA
55 s panTro1.chr1  129699067 56 + 229575298 GGGAACCATTCCTCGAAAGTTGCATCATCACTAAAAGTGATGAAGGTACGTGAGCA
56 s mm5.chr3       65458732 56 - 160575607 GGGAACCACTCTTCAAACGTTGCATCATCACTGAACGTGATGAAGGTGCGAGAGCA
57 s rn3.chr2       68237100 56 - 258222147 GGGAACCATTCTTCAAACGTGGCATCATCACTGAATGTGATGAAGGTACGTGAGCA
58 s canFam1.chr17  62929990 56 +  66886099 GGAAACCATTCCTCAAATGTTGCATCATCACTAAAAGTGATGAAAGTACGCGAGCA
59 s galGal2.chrUn  96971568 56 + 165033910 GGGGAAGAACGTTCGAAGGTTTCGTCGTCGCTGAAGGCATTGAAGGTGCGCGAGCA
60 s fr1.chrUn     290886972 56 + 349519338 GAAAAGGCCACCTTAAAAGCTTCGTCGTCGCTGAACGTGATGTAAGTACGGGAGCA
61 s danRer1.chrUn 128306586 56 - 367113659 GGAAAGACACGCTGGAAGGACTCATCATCACTGAATGTGATGTAGGTGCGAGAGCA
62
63 a score=25539.0
64 s hg17.chr1     147962507 63 + 245522847 GCG-----AGCAGGGGGGTTGA------------CGGGT------CCAGTCCCAGCATG--AGGAGTCAATGCAGACACCGAGGGAG-C
65 s panTro1.chr1  129699123 63 + 229575298 GCG-----AGCAGGGGGGTTGA------------CGGGT------CCAGTCCCAGCATG--AGGAGTCAATGCAGAAGGGGAGGGAG-C
66 s mm5.chr3       65458788 75 - 160575607 GTG-----AGCAGGAGGGGTGGCAGCGGCAGCTCCAGTC------CCGGTCCCAGCATG--TGGAGCCAGTGCAGAGGCTGTAGGAG-C
67 s rn3.chr2       68237156 63 - 258222147 GTG-----AGGAGGAGGGACGG------------CAGGT------CCAGTGCCAGCATG--TGCAGTCAGTGCAGAGGACGTAGGAG-C
68 s canFam1.chr17  62930046 63 +  66886099 GCG-----AGGTGGAGGGACAA------------CGGGT------CCAGTGCCGGCATG--GGGAGTCAGTGCAGAAGCTGTGGGAG-T
69 s galGal2.chrUn  96971633 66 + 165033910 GCA-----GGCCGGGGCTGCGG------------CCGGG------GCGGCGTCTGCCTGCTGCGGGTCCTGGTCCAACCTGCAAGAGCC
70 s danRer1.chrUn 128306646 74 - 367113659 GTGTTTACAGCAGCTGTGTTTG------------TGAATGGGACACCGGGTGCTGCGGA--AAGCGTTGATTCGGACTGGGAAAGAG-C
71
72 a score=14242.0
73 s hg17.chr1     147962570 10 + 245522847 AGGATCAAGT
74 s panTro1.chr1  129699186 10 + 229575298 AGGATCAAGT
75 s mm5.chr3       65458863 10 - 160575607 AGGATCAAGG
76 s rn3.chr2       68237219 10 - 258222147 AGGATCAAGT
77 s canFam1.chr17  62930109 10 +  66886099 AGGATCCAGC
78 s galGal2.chrUn  96971699 10 + 165033910 GGGGTCAGCT
79
80 a score=550634.0
81 s hg17.chr1     147984545 85 + 245522847 ATGGCGTCGGCCTCCTCCGGGCCGTCGTCTTCGGTCGGTTTTTCATCCTTTGATCCCGCGGTCCCTTCCTGTACCTTGTCCTCAG
82 s panTro1.chr1  129723125 85 + 229575298 ATGGCGTCGGCCTCCTCCGGGCCGTCGTCTTCGGTCGGTTTTTCATCCTTTGATCCCGCGGTCCCTTCCTGTACCTCGTCCTCAG
83 s mm5.chr3       65474800 76 - 160575607 ATGGCGTCCGCCTCCTCAGGGCCAGCG---GCGGCCGGGTTTTCATCCCTTGATGCCGGGGCCCCTGCTGGTA------CCGCAG
84 s rn3.chr2       68255714 76 - 258222147 ATGGCGTCCGCCTCCTCAGGGCCAGCG---GCGGCGGGGTTTTCACCCCTTGATTCCGGGGTCCCTGCCGGTA------CCGCAG
85 s canFam1.chr17  62947719 82 +  66886099 ATGGCGTCGGCCTCCTCTGGGCCGTCG---GCGGCTGGGGTTTCATCCTTTGATCCCGGGGTCCCTTCCTGTGCTTCGGCTTCAG
86
87 a score=365854.0
88 s hg17.chr1     148078400 182 + 245522847 TCACATGATGCCGTTGGTGAGGTACTGGAAGCCGTCATAGAGTTTGGTGGTGATAGACCGCATACTGCCATCCACCATCTGCTCCACCAGCAGCTGCAGCTGCTCCTCAGTCATGCTCAT-GTGGAACCTCTCTTTGAGGTTTCGAATGGTGCTGGAGCCATGGAAGCAAGGAAGCTGAGA-AC
89 s panTro1.chr1  129830209 182 + 229575298 TCACATGATGCCGTTGGTGAGGTACTGGAAGCCGTCATAGAGTTTGGTGGTGATAGACCGCATACTGCCATCCACCATCTGCTCCACCAGCAGCTGCAGCTGCTCCTCAGTCATGCTCAT-GTGGAACCTCTCTTTGAGGTTTCGAATGGTGCTGGAGCCATGGAAGCAAGGAAGCTGAGA-AC
90 s mm5.chr3       65575311 182 - 160575607 TCACATGATGCCATTGGTGAGGTACTGGAAGCCATCGTAGAGTTTGGTGGTGATGGACCTCATGCTGCCGTCCACCATCTGCTCCACCAGCAGCTGCAGCTGCTCCTCAGTCATGCTCAT-GTGGAACCTCTCTTTGAGGTTGCGAATGGTGCTGGAGCCATGGAAGCAAGGAAGCTGAGA-AC
91 s rn3.chr2       68356506 182 - 258222147 TCACATGATGCCATTGGTGAGGTACTGGAAGCCATCGTAGAGTTTGGTGGTGATGGACCTCATGCTGCCGTCCACCATCTGCTCCACCAGCAGCTGCAGCTGCTCCTCAGTCATGCTCAT-GTGGAACCTCTCTTTGAGGTTGCGAATGGTGCTGGAGCCATGGAAGCAAGGAAGCTGAGA-AC
92 s canFam1.chr17  63050241 182 +  66886099 TCACATGATGCCATTGGTGAGGTACTGGAAGCCGTCATAGAGTTTGGTGGTGATAGACCGCATGCTGCCATCTACCATCTGCTCCACCAGCAGCTGGAGCTGCTCCTCAGTCATGCTCAT-GTGGAACCGCTCTTTGAGGTTGCGGATGGTGCTGGAGCCATGGAAGCAAGGAAGCTGAGA-AC
93 s galGal2.chrUn  96994100 182 + 165033910 TCACATGATGCCGTTGGTGAGGTACTGGAAGCCGTCGTACAGTTTGGTGGTGATGGAGCGCATGCTGCCGTCCACCATCTGCTCCACCAGCAGCTGCAGCTGCTCCTCCGTCATGTTCAT-GTGGAAGCGCTCCTTCAGGTTGCGGATGGTGCTGGAGCCGTGGAAGCAGGGGAGCTGCGA-GC
94 s fr1.chrUn     196934251 182 - 349519338 TCACATGATTCCATTTGTCAGGTACTGGAAGCCGTCGTAGAGTTTGGTCGTCAGCGACCTCATCGAGCCCTCGACCAGCTGATCGATCAGCAGCTGGAGCTGCTCCTCTGTCAGACTCAT-GTGGAAACGTTCCTTCAAACCCCGCATGGTGCTCGACCCGTGGAAACACGGCAGCTGGGA-CC
95 s danRer1.chrNA  19436521 184 - 390413307 TCACATGATACCGTTGGTCAGATACTGGAAGCCGTCGTACAGTTTGGTAGTGATGGAGCGCATGGAGCCGTCCACCATCTGCTCCACCAGCACCTGCAGGTGCTCCTCCGATAAGTACATGGGGGAATAACTCCTTCAGGTTGCGGATAGTGCTGGAGCCATGGAAGCGAGGGAGCTGTGACAC
96
97 a score=172494.0
98 s hg17.chr1     148185136 140 + 245522847 ATGGAAGCGTTTTTGGGGTCGCGGTCCGGACTTTGGGCGGGGGGTCCGGCCCCAGGACAGTTTTACCGCATTCCGTCCACTCCCGATTCCTTCATGGATCCGGCGTCTGCACTTTACAGAGGTCCAATCACGCGGACCCA
99 s panTro1.chr1  129935611 140 + 229575298 ATGGAGGCGTTTTTGGGGTCGCGGTCCGGACTTTGGGCGGGGTGTCCGGCCCCAGGACAGTTTTACCGCATTCCGTCCACTCCCGATTCCTTCATGGATCCGGCGTCTGCACTTTACAGAGGTCCAATCACGCGGACCCA
100 s mm5.chr3       65694347 140 - 160575607 ATGGAAGCGTTTTGGGAGTCACGGGCTGGCCACTGGGCCGGGGGTCCGGCTCCAGGGCAGTTTTACCGCATCCCGGCCACCCCCAGCGGCCTCATGGACCCGGCGTCGGCGCCCTGCGAGGGTCCCATCACTCGGACCCA
101 s rn3.chr2       68486927 140 - 258222147 ATGGAAGCGTTTTGGGAGTCACGGACTGGCCACTGGGCCGGGGGTCCGGCTCCGGGGCAGTTTTACCGCGTCCCGTCCACCCCCAGCTGCCTCATGGATCCGATGTCTGCGCCCTGCGAGGGTCCCATCACTCGGACCCA
102 s canFam1.chr17  63150913 140 +  66886099 ATGGAAGCCTTTCTGGAGTCGCGGTCCAGAGTTTGGGCCGGTGGTCCCGCCCCGGGGCAGTTTTACCACATCCCGCCTAGTTCCGTCGCCTCCGTGGAGCCGGCGTTTTCTCCTTACGGGGGTCCGGTTACGCGCACGCA
103
104 a score=69091.0
105 s hg17.chr10    55251623 116 + 135413628 TTACAGTGAAGTAGATTGACTGTGAGATTGTTTTTCAGTTCCCTCGACAATATTGTTCAAACTC--------CC------CTTGTTTTGTTCAGATGTGA----TTTCCATATTTGTTA------CTTCTGAAG-GGCACA----
106 s panTro1.chr8  56162651 116 + 138322177 TTACAGTGAAGTAGATTGACTGTGAGATTGTTTTTCAGTTCCCTCGACAATATTGTTCAAATTC--------TC------CTTGTTTTGTGCAAATGTGA----TTTCCATATTTGTTA------CGTCCGAAG-GGCACA----
107 s mm5.chr10     56176594 116 - 130633972 TTACAAAGATGTTGATTGACTGTGAGGTTGCACGTCAATTCCCTCAACAACTCTAACCAACGTT--------TC------CTGGCTCTGGTCATGTGTGA----TTTTCATGCCTGTTT------TCTCTGCAG-GGCAAA----
108 s rn3.chr20     14526840 116 +  55296979 TTACAAGGACGTTGACTGACTGTGAGTTTGCACGTCAATCCCTTCAACAACTCTAACCAACGTT--------TC------CTGGCTCTGGTCACATGTGA----TTTTCATGTTTGTTT------TCTCTGCAG-GACAAA----
109 s canFam1.chr26  4431080 116 -  41009621 TTACAGTGAAGTAGATTGACTGTGAGATTGGTTCTCCGTTTCCTCGGCAAAACTGTGCAAATTC--------CC------CTGGGGTTGTTGAGACGTCA----CGTCCACATTTTCTC------TCTCTGGAG-GGCAAC----
110 s galGal2.chr6  27913521 123 -  33893787 TTACAGTGCTGTCGACTGAGATGGAAAGCGTTTCTCAAGCTCCTCCACAACACAGCTCAAGTTG--------CCGTTCTGCTGGTTGTGCTCAGCTGCAG----CCTCGGGAGTTGGCA------GCTCTGGCGTTGCAAC----
111 s danRer1.chr12  3415306 139 +  24175710 TCACAGAACAGTGGACTGAGATGGAAAGCGTTTCTCCAGCTCCTCCACTACTGAGTTCATGCTTGGATTGGGCT------CTGATGGTGGTCCTTCTTGAGCAGGCTCCGCCTCTGTTACACCAGCCTCTGGTTCGACAGACACT
112
113 a score=137977.0
114 s hg17.chr10    55251739 126 + 135413628 TAGTTTGAAGTTCTGAAACATTTGTGCGTAGA---TAGTTTTTTTCTATTTGACTGTACATGTTAG-CTACTGATTTTTCAAGTTCTGCTAAGTTTTTAACGTGTCTGAGGATGCCTTTTGGTTCTCTCT
115 s panTro1.chr8  56162767 127 + 138322177 TAGTTTGAAGTTCTGAAACATTTGTGCGTAGA---TAGTTTTTTTCTATTTGACTGTACATGTTAGACTACTGATTTTTCAAGTTCTGCTAAGTTTTTAACATGTCTGAGGATGCCTTTTGGTTCTCTCT
116 s mm5.chr10     56176710 126 - 130633972 ACGTGTGTAGTTTTGAGGGATCTGCAGGTGGG---CAGTTTTTTTCTATGTGACTGTACATGTTAG-ACACTGATTTCTCGAGCTCTGCCAAGTTTTTCACATGTCTGAGGATCCCTTTTGGATGTCTGT
117 s rn3.chr20     14526956 126 +  55296979 AGGGGTGGAGTTTTGAGAGCTCTGTGGGTGGA---CAGTTTTTCTCGATGTGACTGTACATGTTAG-ACACCGATTTCTCGAGCTCTGCCAGGTTTTTCACGTGCCTGAGGATCCCTTTGGGATGTCTGT
118 s canFam1.chr26  4431196 126 -  41009621 TTGTCTCTAGTTTCCAGCTGTGTGTTGCTGGA---AAGTTTTTTTCTATTTGACTGTACATGTTAG-CAACTGACTTTTCAAGGTCCGCTAAGTTTTTTATATGCTTGAGGATGCCCTTTGGTTGTTTCT
119 s galGal2.chr6  27913644 128 -  33893787 TGGTTTG-AGCTTAGAGATGTGCTTGGGCAGAACGTGGTTTTTGTCTATTTGGCTGTACATATTGG-CCACGGACTTTTCAATCGCTGCTAAATTCTGAATGTTTTTAAGAATACCTTTCAGCTCCCTAC
120 s fr1.chrUn      9089644 117 + 349519338 TAGGATGAAGCTTGGGCACCTT---------G---TAGTTTTTGTCTACTTGGCTGTACATGTTGG-CAATGGACCTCTCTATGTCAGCGAGATTCTGGATGTTTTTCAGGATCCCTTTGAGCTCCTTTT
121 s danRer1.chr12  3415445 124 +  24175710 -----TGCGGTTTAGGGTTGATCACTAGTGGGCGCTGCTTTTTATCTATTTGACTGTACATATTGG-CAACAGATTTCTCGATGTCTGCTATGTTCTGGAGGTTCTTAAGGATCCCCTTGAGTTCCCTCT
122
123 a score=13160.0
124 s hg17.chr10     55251865 17 + 135413628 GAGGGTCTGTTTTACAC
125 s panTro1.chr8   56162894 17 + 138322177 GAGGGTCTGTTTTACAC
126 s mm5.chr10      56176836 17 - 130633972 GGGGTTCTGCCCCCCAC
127 s rn3.chr20      14527082 17 +  55296979 GGGGTTCCGCCCCACAC
128 s canFam1.chr26   4431322 17 -  41009621 GGGGGTCTGTGTCACAC
129 s galGal2.chr6   27913772 17 -  33893787 GGGGAGGTGGCTCTGGC
130 s fr1.chrUn     137770001 14 + 349519338 GAGGA---GTTTCGGGC
131 s danRer1.chr12   3415572 17 +  24175710 GAGGCTCTGGCTCAGAC
132
133 a score=14118.0
134 s hg17.chr10     55251882 71 + 135413628 ACTG---TCGTTGTTGATAGCTGTGTCATAGAGGACTTAATTTTCTCGGCAGGCATCAAGTTGGTCGT-GCATTT
135 s panTro1.chr8   56162911 71 + 138322177 ACTG---TCGTTGTTGATAGCTGTGTCATAGAGGACTTAATTTTCTCGGCAGGCATCATGTTGGTCGT-GCATTC
136 s mm5.chr10      56176853 71 - 130633972 TGCGGGTTGGATGCTGGTGGCTGTGTCGTA---GACGTGGTTTCTCTGGCGTGTGTGGCACTGGCAGT-GCATTT
137 s rn3.chr20      14527099 71 +  55296979 GGTGGGTTGGATGCTGGTGGCTGTGTCGTA---GACATAGTTTCTCTGGCGTGTGTGACACTGGCAGT-GCATTT
138 s canFam1.chr26   4431339 74 -  41009621 ACGGTCGTGGATGCTGGTAGCTGTGCGACAGAGGGCTCCACGTCCTCGGCAGGTGTCACACTGACAGT-GTGCTT
139 s galGal2.chr6   27913789 44 -  33893787 ACTGCGGCCGGTGGTGGTA------------------------------CAGCTGGCTGTTTGGCAGG-GGATTT
140 s fr1.chrUn     137770015 54 + 349519338 TCTGTAGTGGGAGCAGGGG--------------------GTGGTGTTGGCCGGAGAGACACTGGCCGCAGCGTT-
141
142 a score=9016.0
143 s hg17.chr10     55251953 19 + 135413628 AACACCTGTTATACAGACA
144 s panTro1.chr8   56162982 19 + 138322177 AACACCTGTTATACAGACA
145 s mm5.chr10      56176924 19 - 130633972 AGCAGCTGGTGCAGAGATG
146 s rn3.chr20      14527170 19 +  55296979 AGCAGCTGGTGTAGAGATG
147 s canFam1.chr26   4431413 19 -  41009621 CACAACTGGTACACAGACA
148 s fr1.chrUn     137770069 19 + 349519338 GGTGCCTCCGAAAGGGACG
149
150 a score=71637.0
151 s hg17.chr10    55251972 300 + 135413628 CACTCTGTGGACAGAAATGAAGCTgaaggaggtggagggcaaggaatagaaggaggtggt---ggaggaagaggagttggaaatggaggtagaagaggtggTGTTGGGGGACCAGACGTTGAAACGGAAAGTGGAAAAAATGTaggaggaggaagaggaagagggatagaaggaggagagggaggaggacaaaaaagagaaaaaggagaaatgtcaggaggaggagcaagaggagcaggagcaggaggaggagaaggaggagaaataggaggaggagggggaaggggaCAGGCAGAAGGAGAG
152 s panTro1.chr8  56163001 276 + 138322177 CTCTCTGTGGACAGAAATGAAGCTgaaggaggtggagggcaaggaatagaaggaggtggt---ggaggaagaggagttggaaatggaggtagaagaggtggTGTTGGGGGACCAGACGTTGAAATGGAAAGTGGAAAAAATG------------------------TagaaggaggagagggaggaggacaaaaaagagaaaaaggagaaatgtcaggaggaggagcaagaggagcaggagcaggaggaggagaaggaggagaaataggagaaggaggaggaaggggaCAGGCAGAAGGAGAG
153 s mm5.chr10     56176943 243 - 130633972 CTGTCTGTGGATGGAATGGACGTGGAAGGAGGCTGTGGGAAGAGGCGGGGAGCTGGTGGCCGAGGAGGAGGAGGAAGTGACAGTGGAGGAGGAAGAGGTAGAGAAGAAGTAGGGGGTGTAGAAATGGGAA---GAGAAAATGTAACAAGTTGTGGGGGAGGAGGGTTAGGGGGAGAAAGGGGAAGAGG---------------------------------------AAAAGTGGTAAAGGCAATGGGAGGTCTAGG---------AAGAGGCGGATGTGGGAGGGG---------AGCAGAG
154 s rn3.chr20     14527189 243 +  55296979 CTGTCTGTGGATGGGACGGAAGTGGAAGGAGGCAGTGGGAAAAGGCGGGGAGCTGGTGGTCGAGGAGGAGGAGGAAGTGATGGTGGAGGAGGAGGAGGAAGAGAAGAGGCGGGGGTTGTAGAAATGGGAA---GAGAAAATGTAAGAAGTTGGGGGCGAGGAGGGTTAGGGGAAGAAAGGGGAAGAGG---------------------------------------AAAAGTAGTAAAGGCAATAGGAGGTTGAGG---------AAGAGGCAGCTGTGGGAGGGG---------AGCAGAG
155 s canFam1.chr26  4431432 195 -  41009621 CACGTAGTGGATGGAGCCCAAGACGGAGGGGACAgaggagaaggaagaggaggtgatggt---ggggggagggag---ggaagtgaaggtagaagaggtgatg------------------------------gagaagaag---------agggaggagaaggtggggtggaaagtgggagaaatgg---------------------------aggtggaggaggaagaggaggaggaggaggaggaggggcagg---------------------------tgg---------aggagAG
156
157 a score=139704.0
158 s hg17.chr10    55252272 227 + 135413628 ATGTTTGGTGGATGGGCAAAATTTTCAAAAATATTTCTTTCGGTTTCAATAGGTAACATA------CAAATAGGTGTCTCTCTCCTAGAGAGTGAAGAATGTAAAACACAAGGCCTT---GAAGGAGAAAGTTCCAAGGAACACTCAGCAGGAGAACTGATGACATTAGGTTCT------GATTTGAGTTCCACAGTTCTTGAAACAGTTGGCAAAGTGGAGAATGAGAAGTGAGGCCTGGG
159 s panTro1.chr8  56163277 227 + 138322177 ATGTTTGGTGGATGGGCAAAATTTTCAAACATATTTCTTTCGGTTTCAACAGGTAACATA------CAAATAGGTGTCGCTCTCCTAGAGAGTGAAGAATTTAAAACACAAGGCCTT---GAAGGAGAAAGTTCCAAGGAACACTCAGCAGGAGAACTGATGACATTAGGTTCT------GATTTGAGTTCCACAGTTCTTGAAACAGTTGGCAAAGTGGAGAATGAGAAGTGAGGCCTGGG
160 s mm5.chr10     56177186 230 - 130633972 ATGCTAGGTGGATGGGGAGCGATCTCAAAAGAGTTCCTTTTTGGTTCTGTATCTGATGCA------CATGTGGGAGTCTCTCTCTTAGAGCTTAAGGAGTTTAAAATACGGGGTCTCAGAGGAGGAGAAAGTTCCAAGGTGCAGTCAGCGGGAGAAGTGACCACATTAGGTTCC------GACCCGAGTTCCACCGCTCTGGAAATCGTTGGCAGAGTTGAGAAAGAAAAGTGAGACCAAGA
161 s rn3.chr20     14527432 230 +  55296979 ATGCTGGGTGGATGGGGAACCATTTCAAAAGAGTTCCTTTTTGTTTCTGTATCGGAGGCA------CAAGTGGGAGTCTCTCTCTTAGAGCCTAGGGAGTTTAAAACGCGGGGTCTCCGAGGAGGAGAAAGTTCCAAGGTGCAGTCAGCGGGAGAAGTGACAACGTCAGGTTCT------GACCCGAGTTCTACCGCTCTTGAAATTGTTGGTAGAGTTGAGAAAGAAAAGTGGGACCAAGA
162 s canFam1.chr26  4431627 227 -  41009621 ATGTTTGGTGGTTTGGGAAGGATTTCGAAAATGTTCCTTCCGGCTTCAACTGTCAACAGA------CATGTGGGCATCTCTCTCCTAAAAACCGGGGAATTTAAAATGCAGGGCATT---GAAGGAGAAAGTTCCAAAGAACAGTCCGCGGGAGAGATGATGACATCAGGTTCT------GCCTGGAGTTCCACAGTTCTCGAAACAGTTGTCAAAGTGGAGTAGGAGGAGTGAGACGAAGG
163 s galGal2.chr6  27913978 239 -  33893787 gTTTTAGGTGGGTCTGGAATGTTTTCTGTAACTTCTCCTTTGGTCTGAGGAGCTAGAAAACTTTGGCAAACGGGTTTCTTTATCCTAAAAGACGGAGGAGTTGGCTTGCGAGTTGGT---GGAGGAGAAAGTTCTTCAGGATAGTCATGGTGAGTGATGATTACAGAGGGGACCGCAGAGGGCTCCGGCTCAACTACTTCACAAGGTGTTGGAGAGGACAGAGGAGAAGAGCGAAGGCAAGG
164
165 a score=27341.0
166 s hg17.chr10    55252499 121 + 135413628 AAAGCAAAATG-------AAGAGTCT--G--------------------------AAGAGA------------------------------------GAGATTTCAACTGTTCTGTTCCTTCTATCATCAGTGTTTCACCTTGCCTTATTTCCTCTTTCTCTGTC-AAATTTGCCTCTTCAGTTGT--AAGCAAT
167 s panTro1.chr8  56163504 121 + 138322177 AAAGCAAAATG-------AAGAGTCT--G--------------------------AAGAGA------------------------------------GAGATTTCAACTGTTCTCTTCCTTTCATAATCAGTGTGTCACCTTGCCTTATTTCCTCTTTCTCTGTC-AAATTTGCCTCTTCAGTTGT--AAGCAAT
168 s mm5.chr10     56177416 118 - 130633972 GGAGGAAAAAG-------AAGAGCCA--G--------------------------AAGACA------------------------------------GAGATTTCAGCTGCTCTGTTTGCTGGACGATTAGGGTGTCTCTGTGTC---CCCCTTCTTTCTCTGAC-TCGTGGGCATCTTCAGTTGC--CAGCAGA
169 s rn3.chr20     14527662 118 +  55296979 GGAGGAAAAAG-------AAGAGCCC--G--------------------------AAGACA------------------------------------GAGATTTCAGTTGCTCTGTTTGCTGTACGATTAGGGTGTCTCTGTGCC---CCCCTTCTTTCTCTGAC-CCACGGGCATCTTCGGTTGT--CACCATT
170 s canFam1.chr26  4431854 121 -  41009621 AGAGAGAAATG-------AGGAGTCT--G--------------------------AAGACA------------------------------------GAGATTCCACATGCTGTGCTCCACGTGGGAGCAGGGGCTGGCCTGGCCTTGCTTCTCCTGTCTCGGGC-ACACTGGATTCTCCAGCTGC--AGGCAGG
171 s galGal2.chr6  27914217 193 -  33893787 AGAAGCAAACACACTTTTAGGAGACT--GCTCTAGCGTGTTATCTCTTTCTTGCAAACAGATGCTGTGCGTTGGTGAACGGGTGGATTTGACATCAGGAGATTTCACTTGCTTCATTTCCTGCAAAGCCTGCTGCTCAAATTGTCTTGCCTTCTCTTTTACAGTTAACGTGGGGCCACTTATTTTTTGAAATAGT
172 s danRer1.chr12  3416078 117 +  24175710 AAAACAGAGAG-------AATAATTTCGG--------------------------AAGAGA------------GTGACCCAC---------------GAGAGTCCTGACCTTGCCTCAACTTTAC-------GTCCTGCAAGGCC--------TGCTGCTCAAAC-TGTCGTGCCTGCTCTTTTAC--AGTCAAT
173
174 a score=18054.0
175 s hg17.chr10    55252620 34 + 135413628 GGATTGCTGCTACCTCTTTTGTTTGTACAGATTC
176 s panTro1.chr8  56163625 34 + 138322177 GGATTGCTGCTACCTCTTTTGTTTGTACAGATTC
177 s mm5.chr10     56177534 34 - 130633972 ACGTTGCTGCTACCTCTCTGGCTTGGGTGGCATC
178 s rn3.chr20     14527780 34 +  55296979 AGGTTGCTGCTACCTTGCTGGCTTGGGTGGCATC
179 s canFam1.chr26  4431975 34 -  41009621 GGGTTCCTACTACCTCTCTGGTTTGGAGGGGTTC
180 s galGal2.chr6  27914410 34 -  33893787 GGACTGCTAATATCAACTCTGCTATGCTGATTTT
181
182 a score=75824.0
183 s hg17.chr10    55252654 151 + 135413628 CAGTGTTTTCATTTTCAGCTTTCTGCCTGGTGCCTTG------------CCACTGCTGCAGATCTATGATCTCTGGTCTATT----TGGAACT--TTCCTCATCAGCCTCCTGGGTAAGCTGACTGACTGACTCCACAGCCTCTGAATCTTTTCTCTTGGGCCCCTCAG-
184 s panTro1.chr8  56163659 151 + 138322177 CAGTGTTTTCATTTTCAGCTTTCTGCCTGGTGCCTTG------------CCACTGCTGCAGATCTATGATCTCTGGTCTATT----TGGAACT--TTCCTCATCAGCCTCCTGGGTAAGCTGACTGACAGACTGCACAGCCTCTGAATCTTTTCTCTTGGGCCCCTCAG-
185 s mm5.chr10     56177568 151 - 130633972 TGGCGCTTTCGCATTCAGCTCTCTGATTGGTGATCTG------------CCACTCCACCAGGTCTATGGTCTCTGGCCTGTT----TGGGGCT--TTCCACATGAGCCGCCTAGGAAAGCTCACAGACTGATTCCACACCCTCTGGATCTTTTCTCTTGGGCCCCTCAG-
186 s rn3.chr20     14527814 151 +  55296979 TGGTTTTTTCGCATTCAGCTCTCTGCCTGGTGATCTG------------CCACTCCACTAGGTCTATGGTCTCTGGTCTGTT----TGGAGTT--TTCCACATCAGCCGCCTAGGAAACCTCACAGACTGATTCCACACCCTCTGGATCTTTTCTCTTGGGCCCCTCAG-
187 s canFam1.chr26  4432009 151 -  41009621 CAGGGCTTTCCTTCCCACCTTCCGGCCTGCGGCTCCT------------CCGTGGCTCCAGCTCTAGGGTTTCTGGCCTTCT----GGGAAGT--TCCCACACTGGTCTCTGAGGGAAGCACACTGGCTGATGCCATATCCTCTGAAACATTTCCCTTGGGCCCCTCAG-
188 s galGal2.chr6  27914444 139 -  33893787 CAGTTCCTTCATTCTCTGCTTTGAGTCTTTCCTGTTG------------CCACTGAACAGGGTCCATGATAACCGGCCTGCT----CAGAGAA--CCAGGCGCGTGCCTCTTAGTAACGTGAGCTGGTACTGTCCATGCACGGTGACT------------GCCTCCCAA-
189 s danRer1.chr12  3416235 163 +  24175710 CAATCATCTCCTTGCTGTCCTTAAGGCTGGCCTTTAGCAGCTGCAGCTCCCACTGAACTGGATCCATCACCACCCTCCTACTCCGCTGAGATTCGTCCCACTTGTGCAACCGAG--AAGGTAATGTCCAG-----GAATGTCCTGAGCCTGAATTCGGGAATCCCATAAT
190
191 a score=17919.0
192 s hg17.chr10    55252805 66 + 135413628 AGACTTACTCTTGGCTTGTATTTTGGGTGAAAATGGGTCTACAAAATC---TGTTCTCTGTGAAATGTC
193 s mm5.chr10     56177719 66 - 130633972 AGACTGACTCTTAACTTGTGTTCTGGGTGCCAACAGCTCTTCAAAATC---TGTTCGTGGCTGAAGGTC
194 s rn3.chr20     14527965 66 +  55296979 GGACTGACTCTTAACTTGTGTTCTGGGTACAAATAGCTCTCCAAACTC---TGTTCCAGGCTGAAGGTC
195 s canFam1.chr26  4432160 66 -  41009621 GGACTTACTCCTGGCTTGTGTTTTGGGCAAAAATGAGTCTATAAAATC---TGTTCTTAGTAAAAAGTC
196 s galGal2.chr6  27914586 69 -  33893787 GGCATCTCTCAAGACTAATTGCATAGGAGAAAGAGTATCTAGGGCATCGCTTCTTTTCCGCAGTAACCC
197 s danRer1.chr12  3416398 52 +  24175710 GGACTTACTCAGACCTCTCATACTGGGTGAATACATGTCTAAGAGGTA---ACTC--------------
198
199 a score=243755.0
200 s hg17.chr10    55252871 253 + 135413628 TGAATTTGTTGAT--------ACTTGACTTATGTTTTCCTTATAAAGGGGATTATGGGCACTTAAGTCATCCTCATCAGATAGAAATGTGAATTTTCTTGCAGACTTCAGTTTGTTGCTCTTAAGTGATCCGTCTACATGAGCTGACTTGTGAGCCTCAATAGTATTGGAAGAAAAGGGCATCACAACTTGTTGATGTTTCCTGTCTTCTGAGACTGAGTTATTTCCCCTGCTT--------TGTTGAAAATGGTAGAGAAGGA--------AAAGA
201 s panTro1.chr8  56163914 253 + 138322177 TGAATTTGTTGAT--------ACTTGACTTATGTTTTCCTTATAAAGGGGATTATGGGCACTTAAGTCATCTTCATCAGATAGAAATGTGAATTTTCTTGCAGCCTTCAGTTTGTTGCTCTTAAGTGATCCGTCTACATGAGCTGACTTGTGAGCCTCAATAGTATTGGAAGAAAAGGGCATCACAACTTGTTGATGTTTCCTGTCTTCTGAGACTGAGTTATTTCCCCTGCTT--------TGTTGAAAATGGTAGAGAAGGA--------AAATA
202 s mm5.chr10     56177785 253 - 130633972 TGAGTTTGTTGAC--------CTTTGACCTATACTTTCCATGTAAAGGGGATTATGGGTACTTAAGTTATCCTCATCAGGAACAAATGAGAACGTCCTTGCTGGGTTAGGCTGGCTCTCCTTAAGTGGTCCCTCTACATGAGCTGGCTCATGAGACTCAGTGGTACTGGAGGAAAAGGCCATCCCATCGCGATGACTGCTCCTGTCTTCTGGGACTGAGTTATTTCCCCTGCTT--------TGTTCAAAATGGTAGAGAAGGA--------AAAGA
203 s rn3.chr20     14528031 250 +  55296979 GGAATTTGTTGAC--------CTTTGACCTATACTTTCCATATAAAGGGGGTTATGGGTACTTAAGTCATCCTCATCTGGAAGAAATGAGAACGTCCTTGCTGGGTTAGCTTGGTTG---TCAAGTGGTCCCTCTACATGAGCTGGCTCATGAGACTCAGTGGTACTGGAGGAAAAGGCCATCCCGTCACGATGACTGCTCCTGTCTTCCGGGACTGGGTTATTTCCCCTGCTT--------TGTTCAAAATGGTAGAGAAGGA--------AAAGA
204 s canFam1.chr26  4432226 253 -  41009621 GGAGTTTGTTGGT--------CTTGGATCTACAGCTTCCTTATAAAGAGTACTGTGGAGACTGAAGGCGTCCTCCTCAGACATCAGTGTGAACTTCCTTGCTGACTTGGGCTGGTTGTTCCTAAGGGATCCATCTACATGAGCCTGCTTGTGAGCCTCAATAGTGCTGGAAGGAAAAGGCATCACACTGTGTGGACTTTTCCTGTCTTCTGAGACTGACTTATCTCCCCTGCTT--------TGTTGGAAATGGTAGAGAAGGA--------AAAGA
205 s galGal2.chr6  27914655 253 -  33893787 AGCAGCAGCAGGA--------CTTTGAGTGACACCTTCCACATACAGTGGGTTTTGAGTAGTTAGTGGGTTCTCGTCAGATAAGAAAGTAATGTTACTTGAAGATTTGGGGAGGTTATTGTTCAATGATCCATTGATATTAGATTGCTTGTGAGCCTCAATAGCACGGGAAGCAAAGCTGCTTATAACTCTCTGCCGATCTCCTTCTTCTAAGACTGACTTTTTTCCCCTGCTT--------TGTTGGAAATGGTAGAGAAGAA--------AAAGA
206 s danRer1.chr12  3416450 277 +  24175710 CGATTTTGGTGCTCAGGGCTGCCAAGAGTGACATCATCACGGTACAGGGGGTTGGTTGTAGTAAGTGGGTTGTCATCTGAAAGAAAGGTAATGTTGCTCTCCGACTTGGGAAAGTTGTTGAGCAGGATTCCGTTGGCGGTGGACAGCTTGTGAGCAGTGATAGCACGGGAAGCGAATGAGCTAATGAGACGCTGCCGATCACCATCCTTCAGAACACACCTCTTAGTCCTGATTTCAGCAAGTGTGGAAAGAGATAAAGATGAACTTAACAGAGAAT
207
208 a score=136951.0
209 s hg17.chr11    116124407 94 + 134452384 TTAC--ATATCCTCAACACTCCATTTGTAGGCAAGTTCCTCCACTGCCTTCTTGCTGGCAAGCCTGGCAAAGCGCTTCTGTTCAAATCCATTGGAT
210 s panTro1.chr9  118123572 94 + 136640551 TTAC--ATATCCTCAACACTCCATTTGTAGGCAAGTTCCTCCACTGCCTTCTTGCTGGCAAGCCTGGCAAAGCGCTTCTGTTCAAATCCATTGGAT
211 s mm5.chr9       77776147 94 - 124177049 TCAC--ATATCCTCCACACTCCACTTGTAGGCAAGCTCCTCCACAGCCTTCTTGCTGGCGAGCCTGGCAAAGCGCTTCTGTTCAAAGCCATTGGAT
212 s rn3.chr8       79766056 94 - 129061546 TCAC--ATGTCCTCAACACTCCACTTGTAGGCAAGCTCCTCCACAGCTTTCTTGCTGGCAAGCCTGGCAAAGCGCTTCTGTTCAAAGCCATTGGAT
213 s canFam1.chr5   72268290 94 -  92064832 TTAC--ATATCCTCAACACTCCACTTGTAGGCAAGTTCCTCCACCGCCTTCTTGCTGGCAAGCCTGGCAAAGCGCTTCTGTTCAAATCCATTGGAT
214 s galGal2.chr24   4774582 96 +   5910111 TTGCGAAAGTCTTCAATGCTCCACTTGTATGCAAACTCCTGAGCTGCCTTCTTGTTGGCCATCCTGGCAAAGAACTGCTGCTCAAATCCATTGGAC
215 s fr1.chrUn     206483220 94 + 349519338 TCAC--ATATCTTCTACACTCCACTTATAGGCTGCCTCCTGAGCAGCTCTTTTATCTGCCATTCTCTCATAGCGTTTCTTCTCAAAACCATTTGAC
216
217 a score=311622.0
218 s hg17.chr11   116206508 55 + 134452384 ATGCAGCCCCGGGTACTCCTTGTTGTTGCCCTCCTGGCGCTCCTGGCCTCTGCCC
219 s panTro1.chr9 118206938 55 + 136640551 ATGCAGCCCCGGGTACTCCTTGTTGTTGCCCTCCTGGCGCTCCTGGCCTCTGCCC
220 s mm5.chr9      77840023 55 - 124177049 ATGCAGCCCCGGACGCTCCTCACTGTGGCCCTCTTGGCTCTCCTGGCATCTGCCC
221 s canFam1.chr5  72342544 55 -  92064832 ATGCAGCCCCGGGTCCTCCTCGTCGCTGCCCTCCTGGCGCTCCTGGCCTCCGCCC
222
223 a score=21699.0
224 s hg17.chr11   116211733 24 + 134452384 TCACTGGGTGTTGAGCTTCTTAGT
225 s panTro1.chr9 118212083 24 + 136640551 TCACTGGGTGTTGAGCTTCTTAGT
226 s mm5.chr9      77844334 24 - 124177049 TCACTGGGCAGTCAGAGTCTCGCT
227 s canFam1.chr5  72346944 24 -  92064832 TCACTGCGCGTTCAGCTTCTTGGT
228
229 a score=166504.0
230 s hg17.chr11    116211757 354 + 134452384 GTACTCCTCGAGAGCGCTCAGG---------AAGCTGACCTTGAAGCTCTCCAGCACGGGCAGC-AGGCCTTGGCGGAGGTCCTCGAGCGCGGGCTTGGCCTTCTCGCTGAGCGTGCTCAGATGCTCGGTGGCCTTGGCGTGGTACTCGGCCAGTCTGGCGCCGCCGTTCTCCTTGAGAGCCTCAAGGCGCGCGGCCAAGCGCTGGCGCAGCTCGTCGCTGTAGGGGGCCAGATGCGTGCGCAGCGCGTCCACATGGGCGCGCGCGCGGTCGCGCATCTCCTCGCCCAGTGGGCTCAGCTTCTCTTGCAGCTCGTGCAGCTTCTGGCGCGCGCCCTCTTGGAGCTCTGCGCGCAGCGGCTCCAC
231 s panTro1.chr9  118212107 354 + 136640551 GTACTCCTCGAGAGCGCTCAGG---------AAGCTGACCTTGAAGCTCTCCAGCACGGGCAGC-AGGCCCTGGCGGAGGTCCTCGAGCGCGGGCTTGGCCTTCTCGCTGAGCGTGCTCAGATGCTCGGTGGCCTTGGCGTGGTACTCGGCCAGTCTGGCGCCGCCGTTCTCCTTGAGAGCCTCAAGGCGCGCGGCCAAGCGCTGGCGCAGCTCGTCGCTGTAGGGGGCCAGATGCGTGCGCAGCGCGTCCACATGGGCGCGCGCGCGGTCGCGCATCTCCTCGCCCAGTGGGCTCAGCTTCTCTTGCAGCTCGTGCAGCTTCTGGCGCGCGCCCTCTTGGAGCTCGGCGCGCAGCGGCTCCAC
232 s mm5.chr9       77844358 348 - 124177049 GGCCTTGTCGATCACACTCTGG---------ACTTGGGTCTTAAGCGTCTCCAGCATGGGCATC-AGACTATGGCGCAGGTCCTCCAGCGCAGGTCTGGCTTTCTCGCCAAGTGTCTTCAGGTGGGTTTTGGCCCTGGTGTGGTACTCGTTCAAGGTAGGGTTGC------TCTTGAGCTCAGCCAGGCGCTGGGCCAGGCTCTCGCGCATCTGTTCGCTGTGGGGCGCTAGCTGTGTGCGCAGAGAGTCTACGTGTGTGCGCATGCGGTCGCGAAATTCCTCAGCCACAGGGGACAGTCTCCCTTGCAGCTCCTGCAGCTTCTGGCGCGCGCTCTCCTGCAGCTCGGCGCCCAGAGGCGCCAC
233 s canFam1.chr5   72346968 354 -  92064832 GGCCTCGTCGATGGCAGCCAGC---------AGGCTGACCTTGAAGCTCTCCAGCACGGGCAGC-AGGCCCTGGCGCAGGTCCTCGAGCGCGGGCCTGGCCTTCTCGCCGAGCGCGCTCAGCTGCTCGCTGGCCCTGGCGTGGTACTCGGCCAGGCTGGCGCCGCCGCCCTCCTTGAGCGCCTGCAGCCGCGCGGCCAGGCGCTCGCGCAGGTCGTCGCTGTAGGGGGCCAGCTGGGCGCGCAGCGCGTCCACGTGGGTGCGCGCGCGGTCCCGCAGCTCCTCGCCCAGCGGGCTCAGCTTCTCCTGCAGCTCCTGCAGCTTCTGGCGCGCGCCCTCGCGCAGCTCCGAGCCCAGCGGCGCCAC
234 s galGal2.chr24   4799439 363 +   5910111 GGACTTCTGGAGTTCGTCCAGGAAGGAGATCAAGCGGTTCTTGAGGTTCT-CAGCATAGGGGGTGAGGCGCTCCCTGAATTCCTGCACCAGAGGCGTCATCTTCTCACGCAGGTTGCTGAGCTGCTCCATCACCTTGGCCTGGTACTCGGAAGCCTGGGGGATGCCCTTCTCGCGGATCTCCTCCAGCTTCTGGCTCAGCTTCTGCCGCAGCTCATCGCTGTATGGCGCCAGGTTCTTGCGCAGCTCCTCCACGTGCCCACGCAGACGATCCCGCGCCTCCTCAGCCACCGGGGTCAGCTTGGCCTGCATCAGCTCCACCTTCTGCTTGGTGAGCTCCTTCAGCTCCTGAGCCACGGGCGTCAG
235
236 a score=84013.0
237 s hg17.chr11    116212111 105 + 134452384 CTTCTGGCGGTAGAGCTCCATCTCCTCCTGCCACTTCTTCTGGAAGTCGTCCAGGTAGGGCTGCACCTTGGCCTTCACCTCCTCCAGATCCTTGCTCATCTCCTG
238 s panTro1.chr9  118212461 105 + 136640551 CTTCTGGCGGTAGAGCTCCATCTCCTCCTGCCACTTCTTCTGGAAGTCGTCCAGGTAGGGCTGCACCTTGGCCTTCACCTCCTCCAGATCCTTGCTCATCTCCTG
239 s mm5.chr9       77844706 105 - 124177049 CTTCTGGCGGTAGAGCTCCACATCCTCTTTCCATTTCTTCTGGAATTCGTCCAGGTAGGGCTGCACCTTCTGTTTCACTTCCTCTAGGTCCTTGTTCATCTCCTG
240 s rn3.chr2      192507462 102 + 258222147 CTCCTCTCGGAAATGCACGATCTCATCCTGC---TTCTCCTGCAAGTCTTCCAGAAGCTGCCGCCGCTCAGCCTTCTGCTGCTCCAGCTCCTTCTCCAGCTCCTG
241 s canFam1.chr5   72347322 105 -  92064832 CTTCTGGCGGTACAGCTCCACCTCCTCCTGCCACTTCTTCTGGAAGTCGTCCAGGTAGGGCTGCACCTTCTGCTTCACCTCCTCCAGGTCCTTGCTCATCTCCTG
242 s galGal2.chr24   4799802 105 +   5910111 GCGCTGGCGGTACTGCTCCAGCTCCTCCGTCCACTTGGCGGAGAACTGGTCCAGGAAGGGCCGGATCTTCTCCTTCACCTCCTCCAGGTCCTTGGTCAGCTCAGC
243
244 a score=57194.0
245 s hg17.chr11    116212216 121 + 134452384 CCTCAGGCCCTCTGTCTCCTTTTCCAGGTTATCCCAGAACTCCTGGGTCACAGGGCCGAGCTGTTCGCGCAGCTTGCTGAAGGTGGAGGTCACGCTGTCCCAGTTGTCAAGGAGCTTTAGG
246 s panTro1.chr9  118212566 121 + 136640551 CCTCAGGCCCTCTGTCTCCTTTTCCAGGTTATCCCAGAACTCCTGGGTCACAGGGCCGAGCTGTTCGCGCAGCTTGCTGAAGGTGGAGGTCACGCTGTCCCAGTTGTCAAGGAGCTTTAGG
247 s mm5.chr9       77844811 121 - 124177049 TCTCACCCAATCTGTTTCTTTCTCCAGGTTATCCCAGAAGTCCCGAGTCAATGGGCCCAGCCGTTCCTGCAGCTGACTAACGGTTGAACCCAGAGTGTCCCAGTTTTCCAGGAGATTCAGG
248 s canFam1.chr5   72347427 121 -  92064832 CCGCAGCACCTCCGTCTCCTTCTCCAGGTTATCCCAGAACTCCTGCGTGACCGGGCCGATCTGTTCGCGCAGCTTGGTCACCGTGCTGCTCAGGCTGTCCCAGTTGTCCAGGAGTTTCAGG
249 s galGal2.chr24   4799907 121 +   5910111 ACGCAGAGCCTCGGTGTCCTTCAGCCACATCTCGCGCACCTCCTTGTAGTAGGGAGCCATGTCCTCACGCAGCTTGGCAGCCGCGGCACTCAGCGTGTCCAGGTTGTCAGCCAGCTTCAGG
250
251 a score=4872.0
252 s hg17.chr11      1812377 30 + 134452384 ATGCTCCACCTGCATGGCTG--------------GCAAACCATG
253 s panTro1.chr9    2001217 30 + 136640551 ATGCTCCACCTGTATGGCTG--------------GCAAACCACG
254 s mm5.chr7      130142453 26 + 133051633 -----CCAACTGGACTACCGT-------------GTAGAAGATG
255 s rn3.chr1      202843225 26 + 268121971 -----CCAACTAGACTGCCTT-------------GTAGAAGATG
256 s canFam1.chr18  56425269 44 +  66173745 AGGCTCCACCTGTGTGACTCCACCCGTGTGACCGACAAACCATG
257 s danRer1.chrNA 165962846 24 - 390413307 -----AGTTCAGGAAGTCCA--------------GGAAGAGA-G
258
259 a score=333744.0
260 s hg17.chr12     38440094 227 + 132449811 TTATTCCACATCAGAAGCATCATTGTCAGAAAGATGATAGTTACTTCCCTTTACCCGAATATATTCAATATATCTCCCTTCATCAGAATCTG---AAGTGCCACATGTACATAGCCTGTTGTCAAAGAGTGATTCAATTTCCTCTAATTTTTTGCCTTTGGTCTCAGGAAGACAGCCATAGATGAAAAGGAGTCCCACAGCAGCAAATCCAGCATAGAGGAAGAAAGCTC
261 s panTro1.chr10  39016533 227 + 135301796 TTATTCCACATCAGAAGCATCATTGTCAGAAAGATGATAGTTACTTCCCTTTACCCGAATATATTCAATATATCTCCCTTCATCAGAATCTG---AAGTGCCACATGTACATAGCCTGTTGTCAAAGAGTGATTCAATTTCCTCTAATTTTTTGCCTTTGGTCTCAGGAAGACAGCCGTAGACGAAAAGGAGTCCCACAGCAGCAAATCCAGCATAGAGGAAGAAAGCTC
262 s mm5.chr15      91666098 227 + 104138553 TTACTCCACGTCAGAAGCGTCGTTGTCGGAGAGATGATAGTTGCTTCCCTTCACGCGGATGTACTCAATGTACCTCCCTTCATCCGAGTCGG---CAGCGCCACATGAACATAGCCGGTGGTCAAAGAGCGATTCGATTTCCTCCAATTTTTTCCCCTTGGTTTCAGGGAGGCAGCCATAGACAAAAAGCAGTCCCACAGCGGCGAATCCGGCGTAGAGGAAGAATGCTC
263 s rn3.chr7      129719269 227 + 143082968 TCACTCCACGTCCGAGGCGTCGTTGTCGGAGAGATGGTAGTTACTTCCCTTCACGCGGATGTACTCGATGTACCTGCCCTCGTCCGAGTCCG---CGGTGCCGCAGGTGCACAGCCGGTGGTCGAAGAGCGATTCGATTTCCTCTAGTTTTTTCCCTTTGGTTTCAGGAAGACAGCCATAGACGAAAAGCAGTCCCACAGCGGCGAATCCGGCGTAGAGGAAGAACGCTC
264 s canFam1.chr27  32235556 227 -  49087461 TTATTCCACATCAGAAGCATCGTTGTCAGAAAGATGATAGTTACTTCCCTTCACCCGAATATATTCAATATATCGCCCTTCATCAGAATCTG---AAGCACCACATGTACATAACCTGTTGTCAAAGAGTGATTCAATTTCCTCTAATTTTTTCCCTTTGGTCTCAGGAAGACAGCCATAGATGAAAAGGAGTCCCACACCAGCGAATCCAGCATACAGGAAGAAGGCTC
265 s galGal2.chr1  179729132 227 - 188239860 TTATTCCACATCAGAAGCATCATTGTCAGAAAGATGGTAATTACTTCCCTTCACCCGAATATATTCAATATACCTCCCTTCATCAGAATCTG---ACATACCACATGTACATAGCCTGCTTTCAAACAAAGATTCAATTTCCTCTAGTTTTTTCCCTTTAGTCTCAGGAAGGCAGCCATAGATGAAAAGGAGTCCCAGGCCAGCAAACCCTGCGTACAGAAAGAAGGCTC
266 s fr1.chrUn     213944794 227 + 349519338 CTAGTCCACATCAGAGGCGTCGCTCTCAGACAGGCGGTAGTTGCTGCCCTTTACCCGGATGTACTGCACGTTCCGGCGGTCGTTGCGGGAGG---AGGCTCCGCAGGAGCAGAGCGGACCGGAGAACAGGCTCTCGATGTCCTCCAGCTGCAGGCCCTGGGTCTCCGGGAGGCAGCCCAGGATGAAGAAGAGGCCCAGCACCACCAGGCCAGCGTACATGAAGAACGCCC
267 s danRer1.chrUn  27538197 206 + 367113659 TCACTCCTCCTCATCCTCGTCTTCATCAGAG---CGGGAGTTTCCTCCGTTTACCCGCATGTACT---------------------GATCTGTGTGGGCTCCGCAGCTGCAGAGTCGCCTGCTGAACAGAGACTCGATCTCCTCCAAGCGCAAACCCTTGGTCTCCGGCAGACACCCCGACACGAACACGAAGCCCAGCAGAGCCAGAGCAGCGTACAGGAAAAACGCTC
268
269 a score=115495.0
270 s hg17.chr13    112381694 259 + 114142980 ATGAACTCACCAGAGGCGAGGCTCTGCGTTGCTCAATGCAGAGACTCTTACCCAGGGTGTCAGCCTCTGAAAGATACACGTGCCTGGGCCTCTTCCCTGAAGATGGACCCGGCAGGTCTGGAGGGAGG-CCCCCGTGATGAATCCCG-TGATGAGCCGCCGATCCGAGCTCAGGCTGCGTCATGGGACCAGCCACAAGGTTGCCTGACC-TATAAAGGTCGCAGGAGTGCCTCAGGGACACAGAAGCAGTTACAGCTGCCAG
271 s panTro1.chr14  95994697 259 +  97804244 ATGAACTCACCAGAGGCGAGGCTCTGCGTTGCTCAATGCAGAGACTCTTACCCAGGGTGTCAGCCTCTGAAAGATACACGTGCCTGGGCCTCTTCCCTGAAGATGGACCCGGCAGGTCTGGAGGGAGG-CCCCTGTGATGAATCCCG-TGATGAGCCGCTGATCCGAGCTCGGGCTGCGTCATGGGACCAGCCACAAGGTTGCCTGACC-TATAAAGGTCACAGGAGTGCCTCAGGGAGACAGAAGCAGTTACAGCTGTCAG
272 s mm5.chr8       12764663 188 + 128688707 ATTTGTTCACCAGAG----TGTCCTGGCCTCCTGCCTATGTGGACTCATTCCCAAGG-ACCAGCCT-TGAAGGACGCA---ATGTAGGGCTCC---------ATGGA------------GGAGGGAGG-TCTGTGTGACA-----------------------------------------CTGGGACTTGCCACAGGTCAG--TGATTGTTCAGAGGTCACAGGAGTGCCACCCTCAGGCAGAGTCATCTGTCTTTTCCAG
273 s rn3.chr16       8607378 190 -  90224819 ATCCATTTACCAGAG----CGACCTGGCCTCCTGCCTAGGGGGGCTCATTCCCAAGG-ACCGGTCT-TGAAGGGTGTA---TTATATGGTTTC---------ATGAA-----------GGGAGGGAGG-TCTGTGTGACC----------CTGGGACACCGCT------------------------------ACAGGTCAG--TGATTGTTCGGAAGTCACAGGAATGCCACCCTCAGGAAGAGTTATCTATCTTTTCCAG
274 s canFam1.chr22  63116876 177 +  64236280 A------------------TGTGCTGGTCTGCTCAGGGCAGGAGCTCTTCGCCGGAT-GTCAGTCC-CGA--GACGCACATGCCTGGGCTTCT-------------CCCTCACAGGACTGCAGCAAGGACCACCACGGTGGACACTGAGGAGGCCCCGCCAGGCCGA----------------GGGATGGAGGAGAGGCCAT--CGATG------GAGCAGCATGGGGTCGTCAT--------------------------G
275
276 a score=694393.0
277 s hg17.chr14     98710240 325 + 106368585 TTAGCTCCTCTCGGCCTGCTCGATTTTGACGTCGTTAGTCAGCAAGTGCTCGCCGTGCCACTTTTTCATGTGTTTCTCCAGGGTGCTGTAGACGCTGAAGGGCATCTGGCAGATGTCGCAGCGGTACACCTCCTTGCCGATCTGCCCGTGCGTCTTCATGTGGCGCGTGAGCTTGCTGCTCTGCGCGCACGCGTAGTTGCACAGCTCGCACTTGTAAGGCCGCTCGCCGGTGTGGCTCCGCCGGTGCACCGTCAAGTTGCTGCAGTTCTTGAACACCTTGCCGCAGTACTCGCACGTGTCGCTGCGGCGGCCCTCCTTGGAGCTg
278 s panTro1.chr15  99208107 324 + 106954593 TTAGCTCCTCTCGGCCTGCTCGATTTTGACGTCGTTAGTCAGCAAGTGCTCGCCGTGCCACTTTTTCATGTGTTTCTCCAGGGTGCTGTAGACGCTGAAGGGCATCTGGCAGATGTCGCAGCGGTACACCTCCTTGCCGATCTGCCCGTGCGTCTTCATGTGGCGCGTGAGCTTGCTGCTCTGCGCGCACGCGTAGTTGCACAGCTCGCACTTGTA-GGCCGCTCGCCGGTGTGGCTCCGCCGGTGCACCGTCAAGTTGCTGCAGTTCTTGAACACCTTGCCGCAGTACTCGCACGTGTCGCTGCGGCGGCCCTCCTTGGAGCTg
279 s mm5.chr12     102664235 325 + 115071072 TTAGCTCCTCTCAGCCTGCTCGATTTTGACATCATTAGTCAGCAAGTGTTCACCGTGCCACTTTTTCATGTGTTTCTCCAGGGTGCTGTAGACGCTGAAGGGCATCTGGCAGATGTCGCAGCGGTACACCTCCTTGCCGATCTGCCCGTGCGTCTTCATGTGGCGCGTGAGCTTGCTGCTCTGCGCGCACGCGTAGTTGCACAGCTCGCACTTGTAAGGCCGCTCGCCGGTGTGGCTCCTCCGGTGCACCGTCAGGTTGCTACAGTTCTTGAAGACCTTGCCGCAGTACTCACATGTGTCGCTGCGGCGGCCCTCCTTGGAGCTC
280 s rn3.chr6      132299612 325 + 147642806 TTAGCTCCTCTCAGCCTGCTCGATTTTGACATCATTAGTCAGCAAGTGTTCACCGTGCCACTTTTTCATGTGTTTCTCCAGGGTACTGTAGACACTGAAGGGCATCTGGCAGATATCGCAGCGGTACACCTCCTTGCCGATCTGACCGTGCGTCTTCATGTGGCGCGTAAGCTTGCTGCTCTGCGCGCACGCGTAGTTGCACAGCTCGCACTTGTAAGGCCGCTCGCCGGTGTGGCTCCTCCGGTGCACCGTCAGGTTGCTACAGTTTTTGAAGACCTTGCCGCAGTACTCGCACGTGTCGCTGCGGCGGCCCTCCTTGGAGCTC
281 s canFam1.chr8   70559093 325 +  77374719 TTAGCTCCTCTCGGCCTGCTCGATTTTGACGTCGTTAGTCAGCAAGTGCTCGCCGTGCCACTTTTTCATGTGTTTCTCCAGGGTGCTGTAGACGCTGAAGGGCATCTGGCAGATGTCGCAGCGGTACACCTCCTTGCCGATCTGCCCGTGCGTCTTCATGTGGCGCGTGAGCTTGCTGCTCTGCGCGCACGCGTAGTTGCACAGCTCGCACTTGTAAGGCCGCTCGCCGGTGTGGCTCCGCCGGTGCACCGTCAGGTTGCTGCAGTTCTTGAACACCTTGCCGCAGTACTCGCACGTGTCGCTGCGCCGGCCCTCCTTGGAGCTc
282 s galGal2.chr5   44593849 325 +  56310377 TTAGCTTCTTTCTGCCTGCTCAATTTTGACGTCATTTGTCAGCAAATGTTCTCCATGCCACTTTTTCATGTGTTTCTCCAGGGTGCTGTAAACACTGAAGGGCATCTGGCAAATGTCGCAGCGGTAGACCTCCTTCCCTATCTGGCCATGCGTTTTCATGTGACGCGTCAGCTTACTGCTCTGGGCACATGCATAGTTGCAGAGCTCGCATTTGTAAGGCCGCTCTCCAGTGTGGCTCCGACGGTGCACCGTCAAATTGCTGCAGTTCTTAAAGACCTTGCCACAGTACTCACATGTATCGCTCCTGCGCCCTTCCTTCGAGCTG
283 s fr1.chrUn     275909939 325 + 349519338 TTACACCGTCTCTGCTTGTTCCAGTTTGATGTCATTGGTCATCAAATGTTCTCCATGCCACTTTTTCATGTGTTTCTCCAGAGTGCTGTACACACTGAAAGGCATTTGGCAAATGTCACAACGAAAGACCTCCTTACCAAGCTGGCCATGCGTCTTCATGTGGCGCGTTAGCTTTGAGCTCTGGGCACACGCGTAGTTGCACAGCTCACACTTGTAGGGCCTCTCACCCGTGTGACTGCGTCGGTGCACTGTCAGGTTGCTGCAGTTTTTAAAAACTTTGCCACAGAACTCACAGGTGTCAGACCGCCGGCTGTCCTTTGAGCTG
284 s danRer1.chrUn 103629515 325 + 367113659 TTAGCTTCTCTCTGCTTGTTCAATTTTGACCTCATTCGTCATCAAATGTTCCCCATGCCACTTTTTCATGTGTTTCTCAAGCGTGCTGTAGACGCTGAAGGGCATTTGGCAAATGTCACAGCGGTACACTTCCTTACCGAGCTGGCCGTGTGTCTTCATGTGGCGGGTGAGCTTGCTGCTCTGGGCGCAGGCGTAGTTACAAAGCTCACACTTGTAGGGCCTCTCGCCTGTGTGGCTGCGTCTGTGCACTGTCAGATTGCTACAGTTCTTGAACACCTTCCCACAGTACTCACAGGTGTCACTCCTCCGGCTCTCTTTCGAGCTA
285
286 a score=20235.0
287 s hg17.chr14     98710565 24 + 106368585 ggccgcccggggcccgggccgccc
288 s panTro1.chr15  99208431 24 + 106954593 ggccgcccggggcccgggccgccc
289 s mm5.chr12     102664560 24 + 115071072 GGCCTCCCAGGACCCGGACCACCC
290 s rn3.chr6      132299937 24 + 147642806 GGCCGCCCAGGACCCGGGCCACCC
291 s canFam1.chr8   70559418 24 +  77374719 ggccgcccggggcccgggccgccc
292
293 a score=4011.0
294 s hg17.chr14     98710589 2 + 106368585 AG
295 s panTro1.chr15  99208455 2 + 106954593 AG
296 s mm5.chr12     102664584 2 + 115071072 AG
297 s rn3.chr6      132299961 2 + 147642806 AG
298 s canFam1.chr8   70559442 2 +  77374719 AG
299 s fr1.chrUn     275910285 2 + 349519338 AG
300 s danRer1.chrUn 103629867 2 + 367113659 AG
301
302 a score=517186.0
303 s hg17.chr14     98710591 277 + 106368585 GTGCGGGGTGCTGCCTCCGCTGGCCGTGCCGCTGCGGCCCGAGAGGCCGCCGTCCAGCAGGTCCCCGGGCGGCGTGGAGAAGCGCAGGCTGCCGTTCTCGGACGAGTGCTCGGACGACGTGGCGAAGGGCGACTGTCGTGCGTCCGTGAAGCCCAGGAAGGGGTCCTTCATGAAGTGCCGCGACGCCGCGTAGCCCACCAGCCACTGCGAGTACACGTTCTCGGACGGGATGAGCGCGGCGGGCGGCAGCTCCAGGTCCTTCTCCACCTTGATGCGC
304 s panTro1.chr15  99208457 277 + 106954593 GTGCGGGGTGCTGCCCCCGCTGGCCGTGCCGCTGCGGCCCGAGAGGCCGCCGTCCAGCAGGTCCCCGGGCGGCGTGGAGAAGCGCAGGCTGCCGTTCTCGGACGAGTGCTCGGACGACGTGGCGAAGGGCGACTGTCGTGCGTCCGTGAAGCCCAGGAAGGGGTCCTTCATGAAGTGCCGCGACGCCGCGTAGCCCACCAGCCACTGCGAGTACACGTTCTCGGACGGGATGAGCGCGGCGGGCGGCAGCTCCAGGTCCTTCTCCACCTTGATGCGC
305 s mm5.chr12     102664586 277 + 115071072 GTGAGGTGTGCTGCCCCCGCTCGCCGTGCCACTGCGCCCGGACAGCCCGCCGTCCAGCAGGTCCCCGGGTGGCGTTGAGAAGCGCAGGCTGCCGTTCTCAGAGGAATGTTCCGACGATGTGGCGAAAGGCGACTGGCGCGCATCCGTGAAGCCCAGGAATGGGTCCTTCATGAAGTGGCGCGATGCTGCGTAGCCCACGAGCCACTGCGAGTACACGTTCTCAGATGGGATGAGGGCGGCAGGTGGCAGCTCCAGGTCTTTCTCCACCTTGATGCGC
306 s rn3.chr6      132299963 277 + 147642806 GTGAGGCGTGCTGCCCCCGCTCGCCGTGCCACTGCGCCCCGACAGCCCGCCGTCCAGCAGGTCCCCGGGTGGCGTGGAGAAGCGCAGGCTGCCGTTCTCAGAGGAATGTTCCGACGACGTGGCGAAAGGCGACTGGCGCGCATCCGTGAAGCCCAGGAACGGGTCCTTCATGAAGTGGCGCGACGCCGCGTAGCCCACGAGCCACTGCGAGTACACGTTCTCGGATGGGATGAGGGCGGCGGGTGGCAGCTCCAGGTCCTTCTCCACCTTGATGCGC
307 s canFam1.chr8   70559444 277 +  77374719 GTGCGGCGTGCTGCCCCCGCTGGCCGTGCCGCTGCGGCCCGACAGCCCGCCGTCCAGCAGGTCCCCGGGCGGCGTGGAGAAGCGCAGGCTGCCGTTCTCGGACGAGTGCTCGGACGACGTGGCGAAGGGCGACTGGCGCGCGTCCGTGAAGCCCAGGAACGGGTCCTTCATGAAGTGCCGCGACGCGGCGTAGCCCACGAGCCACTGCGAGTACACGTTCTCGGACGGGATGAGCGCGGCGGGCGGCAGCTCCAGGTCCTTCTCCACCTTGATGCGC
308 s galGal2.chr5   44594200 277 +  56310377 GTGGGGGGTGCTGCCTCCGGAGGCCGTGCCGCTGCGCCCTGAGAGCCCCCCATCCAGCATGTCCCCCGGCGGGGTGGAGAAACGCAGGCTCCCATTCTCCGACGAATGCTCGGAAGAGGTGGCGAAGGGAGATTGTCGGGAGTCTGTGAATCCTAGAAACGGATCCTTCATGAAGTGCCTTGATGCCGCGTACCCTACCAGCCACTGGGAGTAAACATTTTCGGAAGGTATTATTGTTGCTGGTGGCAAGTCCAAATCTTTCTCAACTTTTATTCGT
309 s fr1.chrUn     275910287 277 + 349519338 GTGAGGCGTGCTGCCTCCACTTGCGGTCCCACTACGGCCCGACAAGCCACCGTCCATCAGGTCTCCTGGGGGCGTGGAGAAGCGCAGGCTTCCATTTTCAGAGGAGTGCTCCGATGAAGTGCCGAAGGGAGATTGTCTCGAGTCACTGAAGCCTAGAAAAGGGTCTTTTATGAAATGGCGAGAGGCAGCATAGCCCACTAACCACTGGGAGTAGACATTTTCAGAGGGTATGAGGGGTGCCGGGGAACCATCCCCGTCCTTCTCTGTCTTTATCCTC
310 s danRer1.chrUn 103629869 277 + 367113659 GTGCGGGGTGCTGCCTCCGCTAGCAGTACCACTGCGGCCGGAGAGGCCCCCGTCCAGCAGGTCCCCTGGCGGCGTAGAGAATCGCAAGCTTCCGTTCTCGGAGGAGTGTTCCGAGGAGGTGGCGAATGGAGATTGTCTGGAGTCGGTGAAGCCAAGGAAAGGATCTTTGATGAAGTGGCGGGATGCTGCATAGCCCACCAGCCACTGGGAGTAGACATTTTCAGATGGGATTAGGGGGGCTGGGGGTATGTCCAAATCCTTTTCAATTTTGATCCTC
311
312 a score=56079.0
313 s hg17.chr14     98710868  71 + 106368585 TTG------------GCGGCG---CTGTTGAGCCCGGGGCTGGGCAGCGGCGCGGGCTTGCGCGGGAAGAGCCCGGGGAAGGG---------------------------------------CTC
314 s panTro1.chr15  99208734  71 + 106954593 TTG------------GCGGAG---CTGTTGAGCCCGGGGCTGGGCAGCGGCGCGGGCTTGCGCGGGAAGAGCCCGGGGAAGGG---------------------------------------CTC
315 s mm5.chr12     102664863  83 + 115071072 TTGGCCGCGTGCAGCGCGGGA---CCACCGAGCCCAGGGCTGGGCAGCGGTGCTGGCTTGCGTGGGAAGAGAGCTGGAAAGGG---------------------------------------CTC
316 s rn3.chr6      132300240  83 + 147642806 TTGGCCGCGTGTAGCGCAGGA---CCACCAAGCCCCGGGCTGGGCAGCGGTGCGGGCTTGCGTGGGAAGAGCGCTGGGAAGGG---------------------------------------CTC
317 s canFam1.chr8   70559721  71 +  77374719 TTG------------GCCGCG---CTGTTGAGCCCGGGGCTGGGCAGCGGCGCCGGCTTGCGCGGGAACAGCCCCGGGAAGGG---------------------------------------CTC
318 s galGal2.chr5   44594477 110 +  56310377 TTA------------GATGAG---TTATTTAAGCTGGGGCTTGTGATAGGTGTTGGCTTCCGAGGGAACAAGTTTGGGAAGGGCTCGCCTGGGCCAAAGTTTCTTCCATTGACTGTCCCCTCCTC
319 s fr1.chrUn     275910564  85 + 349519338 TTACTC---------ATGGAG---TTAGCCAGGCCAGAACCAGCGACGGAAGCGGGTTTGTAGGGAAATAAGCTTGGAAGAGA----------------------------ATCATCCGATCCGC
320 s danRer1.chr5    4282954  74 +  40038624 TTG------------GCGGAAGATCCAGAGAGGCTGGAGCTGGAAATGGGCATTGGCTTACGATGGAACATCGCAGAGATGGA---------------------------------------ATC
321
322 a score=4995.0
323 s hg17.chr14     98710939 5 + 106368585 GGTGC
324 s panTro1.chr15  99208805 5 + 106954593 GGTGC
325 s mm5.chr12     102664946 5 + 115071072 TGCGC
326 s rn3.chr6      132300323 5 + 147642806 TGCGC
327 s canFam1.chr8   70559792 5 +  77374719 GGCGC
328 s galGal2.chr5   44594587 5 +  56310377 GGTGC
329 s fr1.chrUn     275910649 5 + 349519338 TGTTC
330
331 a score=9825.0
332 s hg17.chr14     98710944 10 + 106368585 CTGGCGCGAA
333 s panTro1.chr15  99208810 10 + 106954593 CTGGCGCGAA
334 s mm5.chr12     102664951 10 + 115071072 CTGGCGCGAA
335 s rn3.chr6      132300328 10 + 147642806 CTGGCGCGAA
336 s canFam1.chr8   70559797 10 +  77374719 CCGGTGCGAA
337 s fr1.chrUn     275910654 10 + 349519338 CTGCCATTAA
338
339 a score=42070.0
340 s hg17.chr14     98710954 72 + 106368585 Gccgcccccgcgcccgttgaccgcgccgcccgcgcccgcgtccccgcagccgcccgcgtcgtcgtcgtcgcc
341 s panTro1.chr15  99208820 72 + 106954593 Gccgcccccgcgcccgttgaccgcgccgcccgcgcccgcgtccccgcagccgcccgcgtcgtcgtcgtcgcc
342 s mm5.chr12     102664961 69 + 115071072 GGCCCCGCCGCGCCCGTTCACTGCACCCGGTGCACCCGCGTCCCCACAGCCAACAG---CTCCGGCATCACC
343 s rn3.chr6      132300338 69 + 147642806 GGCCCCGCCACGCCCGTTCACTGCGCCCGGTGCACCTGCATCCCCGCAGCCACCAG---CTCCGGTGTCACC
344 s canFam1.chr8   70559807 72 +  77374719 gccgccgccgcgcctgttgaccgcgccgccggtgcccgcgtccccgcagccgcccgcgtcgtcgtcgtcgcc
345
346 a score=1846.0
347 s hg17.chr14     98711026 19 + 106368585 cgcgtccccgccgcccgcc
348 s panTro1.chr15  99208892 19 + 106954593 cgcgtccccgccgcccgcc
349 s mm5.chr12     102665030 10 + 115071072 CGTGTCGC---------CT
350 s rn3.chr6      132300407 10 + 147642806 CGCGTCGC---------CT
351 s canFam1.chr10  63975552 18 +  72717409 AGTGTCCCTGTGGGCC-TC
352
353 a score=1381.0
354 s hg17.chr14     98711045 5 + 106368585 GCACG
355 s panTro1.chr15  99208911 5 + 106954593 GCACG
356 s mm5.chr12     102665040 5 + 115071072 GCACG
357 s rn3.chr6      132300417 5 + 147642806 GCACG
358 s canFam1.chr10  63975570 2 +  72717409 G---G
359 s fr1.chrUn      86333360 5 + 349519338 GGATA
360
361 a score=13475.0
362 s hg17.chr14     98711050 19 + 106368585 CTTCAGGAAGGC-GCCGCGC
363 s panTro1.chr15  99208916 19 + 106954593 CTTCAGGAAGGC-GCCGCGC
364 s mm5.chr12     102665045 19 + 115071072 CTTCAGGAAGGC-GCCCCGC
365 s rn3.chr6      132300422 19 + 147642806 CTTCAGGAAGGC-GCCTCGC
366 s canFam1.chr10  63975572 20 +  72717409 CCTCGGCCAGGTGGCCGCGC
367 s galGal2.chr5   44594680 19 +  56310377 TTTCATGAAGCT-ACTCCTC
368 s fr1.chrUn      86333368 19 + 349519338 CCCGGTGAAGTC-GTGCTGC
369
370 a score=43602.0
371 s hg17.chr14     98711069 105 + 106368585 TTCTGCTTGTCGGCCAGGA---------------------GCTCGCCGTAC-TGCGGCAGTGCGCCTAGGCCCACGTTCTCCATGACCTTGCCCAGCACCAGCGCCTTCTCGTCAGCCAGCGCCTTg-
372 s panTro1.chr15  99208935 105 + 106954593 TTCTGCTTGTCGGCCAGGA---------------------GCTCGCCGTAC-TGCGGCAGTGCGCCTAGGCCCACGTTCTCCATGACCTTGCCCAGCACCAGCGCCTTCTCGTCAGCCAGCGCCTTg-
373 s mm5.chr12     102665064  87 + 115071072 TT---------------------------------------CTCCCCATAC-TGCGGCAGTGCGCCCAGCCCTGCGTCCTCCATCACCTTGCCCAGGGCCAGAGCCTTCTCATCCGCCAGAGCCGCA-
374 s rn3.chr6      132300441  87 + 147642806 TT---------------------------------------CTCCCCATAC-TGCGGCAGTGCGCCCAGCCCTGCGTCCTCCATCACCTTGCCCAATGCCAGCGCCTTCTCATCTGCCAGAGCCGCA-
375 s canFam1.chr10  63975592  92 +  72717409 TTATGCTTCTCGCCCAGGA---------CCTGGTGGAAGGCCTCGCTGAAG-TGCTGCATGGAGCTGAGCACCATGCCCTGCATGACCTCGGGCAGCG-------------------------CGCG-
376 s galGal2.chr5   44594699 105 +  56310377 TTCTGTTTCTCAGCTAGCA---------------------TGTCATTGTAT-TGCTGGATGGCACCGAGACTTACATTCTCTATCACTTTTCCCAGGACAAGGGATTTCTCATCTGGCAGTGATTTG-
377 s fr1.chrUn      86333387 120 + 349519338 TTCTCGTAGTGCTCCCGCAGACGTCTCAGCAGCGTGAAGGTCTTGTCGCACATGGTGCACTGCA--TGGGCCGGTG-----CATGAGCTTGTGCCGCTCGAACGCCGGCTCGTTGGCGAGGATCTTC-
378 s danRer1.chrUn 103630787 106 + 367113659 TTCCGATTGTCAACTATTA---------------------AGTTATTGTAC-TGCTGGATGGAGCTGAGCCCTACATTTTCCACCATCTTTCCTAACGAAAGGGTCTTCTCATCTGAAGGAGGCTTTG
379
380 a score=10567.0
381 s hg17.chr14     98711174 32 + 106368585 gccgcgccgccccccgcgcccgggaccccggg
382 s panTro1.chr15  99209040 32 + 106954593 gccgcgccgccccccgcgcccgggaccccggg
383 s mm5.chr12     102665151 29 + 115071072 GCTG---CAGCCCCTGCGCCCGCCACCCCCGG
384 s rn3.chr6      132300528 29 + 147642806 GCTG---CAGCCCCCGCGCCCGCCACCCCTGG
385 s canFam1.chr10  63975684 26 +  72717409 GCCC--TCGTCGCCCACGCCCACCACCG----
386
387 a score=4398.0
388 s hg17.chr14     98711206 12 + 106368585 cACCCCAC---CACC
389 s panTro1.chr15  99209072 12 + 106954593 cACCCCAC---CACC
390 s mm5.chr12     102665180 12 + 115071072 TGGCACGC---CACC
391 s rn3.chr6      132300557 12 + 147642806 TGGCACAC---CACC
392 s canFam1.chr8   70560183 15 +  77374719 CACCCCGCCCACGCC
393
394 a score=-114.0
395 s hg17.chr14  98711217 1 + 106368585 C
396 s fr1.chrUn  275910877 1 + 349519338 A
397
398 a score=135397.0
399 s hg17.chr14     98711218 72 + 106368585 GCCGTTCTCGCGGTTGCGGCTCAGCTCCGAGTCCATGCTGAAGCTCGACTCGGGCCGGCTCTCGTTCTCCAG
400 s panTro1.chr15  99209084 72 + 106954593 GCCGTTCTCGCGGTTGCGGCTCAGCTCCGAGTCCATGCTGAAGCTCGACTCGGGCCGGCTCTCGTTCTCCAG
401 s mm5.chr12     102665192 72 + 115071072 TCCGTTCTCGCGGCCACGGCCCAGCTCCGAGTCCATGCTGAAGCTCGACTCAGGCCGGCTCTCGTTCTCCAG
402 s rn3.chr6      132300569 72 + 147642806 CCCATTCTCGCGGCCACGGCCCAGCTCCGAGTCCATGCTGAAGCTCGACTCAGGTCGGCTTTCATTCTCCAG
403 s canFam1.chr8   70560198 72 +  77374719 GCCGTTCTCGCGGTTGCGGCTCAGCTCCGAGTCCATGCTGAAGCTCGACTCGGGCCGGCTCTCGTTCTCCAG
404 s galGal2.chr5   44594806 72 +  56310377 GCCGTTTTCTCGGTTACGACTCAGCTCTGAGTCCATACTAAAGCTTGACTCTGGCCTGCTCTCATTTTCCAA
405 s fr1.chrUn     275910878 72 + 349519338 GCCGTTCTCCCTGTTCCGGTATAATTCGGACTCCATGCTAAAGTTTGATTCTGGTCGACTCTCACTCTCTAG
406 s danRer1.chrUn 103630894 72 + 367113659 GCCATTTTCCCTATTCCGACAGAACTCAGAGTCCATGCTGAAGTTTGACTCAGGCCTGCTTTCATTTTCCAA
407
408 a score=501.0
409 s hg17.chr14     98711290 1 + 106368585 T
410 s panTro1.chr15  99209156 1 + 106954593 T
411 s mm5.chr12     102665264 1 + 115071072 C
412 s rn3.chr6      132300641 1 + 147642806 C
413 s canFam1.chr8   70560270 1 +  77374719 C
414 s galGal2.chr5   44594878 1 +  56310377 C
415 s fr1.chrUn     275910950 1 + 349519338 t
416
417 a score=295.0
418 s hg17.chr14     98711291 1 + 106368585 A
419 s panTro1.chr15  99209157 1 + 106954593 A
420 s mm5.chr12     102665265 1 + 115071072 A
421 s rn3.chr6      132300642 1 + 147642806 A
422 s canFam1.chr8   70560271 1 +  77374719 A
423 s galGal2.chr5   44594879 1 +  56310377 t
424
425 a score=33922.0
426 s hg17.chr14     98711292 47 + 106368585 GCAGctcctcctcctcctcctcctcctcctcgtcctcctcctccGGC
427 s panTro1.chr15  99209158 47 + 106954593 GCAGctcctcctcctcctcctcctcctcctcgtcctcctcctccGGC
428 s mm5.chr12     102665266 44 + 115071072 GCAGCTCCTCTTCTTCCTCCTCCTCGTCCTCG---TCGTCCTCAGGC
429 s rn3.chr6      132300643 44 + 147642806 GCAGCTCTTCTTCTTCCTCCTCCTCGTCCTCG---TCGTCCTCAGGC
430 s canFam1.chr8   70560272 47 +  77374719 GCAGctcctcctcctcctcctcctcctcctcgtcgtcctcctcGGGC
431
432 a score=21186.0
433 s hg17.chr14     98711339 20 + 106368585 TCGTGGCCCAGCGACGGGTC
434 s panTro1.chr15  99209205 20 + 106954593 TCGTGGCCCAGCGACGGGTC
435 s mm5.chr12     102665310 20 + 115071072 TCGGGGCCCAGAGATGGGTC
436 s rn3.chr6      132300687 20 + 147642806 TCGGGTCCCAGAGATGGGTC
437 s canFam1.chr8   70560319 20 +  77374719 TCGTGGCCCAGCGACGGGTC
438 s galGal2.chr5   44594918 20 +  56310377 TCATGGCCCAGGGAGGGATC
439
440 a score=13223.0
441 s hg17.chr14     98711359 13 + 106368585 GCTCTCGTGGTGG
442 s panTro1.chr15  99209225 13 + 106954593 GCTCTCGTGGTGG
443 s mm5.chr12     102665330 13 + 115071072 GCTCTCATGGTGG
444 s rn3.chr6      132300707 13 + 147642806 GCTCTCATGGTGG
445 s canFam1.chr8   70560339 13 +  77374719 GCTCTCGTGGTGG
446 s galGal2.chr5   44594938 10 +  56310377 GCTCTCA---TTC
447 s danRer1.chrUn 103631014 13 + 367113659 GCCCTCGCCTTTG
448
449 a score=0.0
450 s hg17.chr14 98711372 3 + 106368585 CGG
451
452 a score=4230.0
453 s hg17.chr14     98711372 3 + 106368585 CGG
454 s panTro1.chr15  99209238 3 + 106954593 CGG
455 s mm5.chr12     102665343 3 + 115071072 CGG
456 s rn3.chr6      132300720 3 + 147642806 CGG
457 s canFam1.chr8   70560352 3 +  77374719 CGG
458 s galGal2.chr5   44594948 3 +  56310377 CTG
459 s fr1.chrUn     275910990 3 + 349519338 TGG
460
461 a score=1089095.0
462 s hg17.chr14     98711375 631 + 106368585 AAGTCACCGTCGGCCGCCTTGAGGCCCTCGCCCGCCAGCTCGCTGGTGCCGGGCTCGGGGGAGCTGGCGGCCGAGAGCCCGTCGTCGGAGCGGCCGGCCAGCGAGCCGGCCTTGTGCATGTGCGTCTTCATGTGGCGCTTGAGCTTGCTGGCCTGCGAGCACGCGTGGTCGCACAGCTGGCACTTGTAGGGCTTCTCGCCCGTGTGACTGCGCCGGTGCACGATGAGATTGCTCTGGAACTTGAAGGTCTTGCCGCAGAACTCGCACGACTTGCTCTTGGCTGGCGGCTGCGGGGGCGGCGTGCCGCCAGGGGGCATGGGCGGCAGCGGCGGCGTGCTCAGGAACGGGGACTTGGGGCTGGGCTGGAA------GGGGTTCAGGAGCCGGTGCATAGGGTTGCCGCGGCCCGGGGACACGGGCGGCGGCG---TGGAGCTGTTGCCCGCCAGCTCGCGGAGCCGCCGCGAGAAGTCCATGGCGGGCGAGTCGATGGCCATGGGGTTCAGGCGCATGACTCGGTCGAAGGCACTGGGGTGCTGGGCGACGAGCCCCATCTCCTCGGCACTGAGGCG---------GTGCGGGTCCAGGTGGTGGCGCGGCGGGGGACTGAAGAGAGGCGGCGTGCCCGGCAGGCGGCCCT
463 s panTro1.chr15  99209241 631 + 106954593 AAGTCGCCGTCGGCCGCCTTGAGGCCCTCGCCCGCCAGCTCGCTGGTGCCGGGCTCGGGGGAGCTGGCGGCCGAGAGCCCGTCGTCGGAGCGGCCGGCCAGCGAGCCGGCCTTGTGCATGTGCGTCTTCATGTGGCGCTTGAGCTTGCTGGCCTGCGAGCACGCGTGGTCGCACAGCTGGCACTTGTAGGGCTTCTCGCCCGTGTGACTGCGCCGGTGCACGATGAGATTGCTCTGGAACTTGAAGGTCTTGCCGCAGAACTCGCACGACTTGCTCTTGGCCGGCGGCTGCGGGGGCGGCGTGCCGCCAGGGGGCATGGGCGGCAGCGGCGGCGTGCTCAGGAACGGGGACTTGGGGCTGGGCTGGAA------GGGGTTCAGGAGCCGGTGCATAGGGTTGCCGCGGCCCGGGGACACGGGCGGCGGCG---TGGAGCTGTTGCCCGCCAGCTCGCGGAGCCGCCGCGAGAAGTCCATGGCGGGCGAGTCGATGGCCATGGGGTTCAGGCGCATGACTCGGTCGAAGGCACTGGGGTGCTGGGCGACGAGCCCCATCTCCTCGGCACTGAGGCG---------GTGCGGGTCCAGGTGGTGGCGCGGCGGGGGACTGAAGAGAGGCGGCGTGCCCGGCAGGCGGCCCT
464 s mm5.chr12     102665346 625 + 115071072 AAGTCGCCATCGGCCGCTTTCAGG---TCACCTGGCAGCTCGCTGGTGCCCGGCTCAGGGGAGCTGGCAGCTGAGAGCCCGTCGTCTGAGCGGCCAGCCAGAGAGCCCGCCTTGTGCATGTGCGTCTTCATGTGGCGCTTGAGCTTGCTCGCCTGCGAGCACGCATGGTCGCACAGCTGGCACTTGTAGGGCTTCTCGCCCGTGTGGCTGCGCCGGTGCACGATGAGATTGCTCTGGAACTTGAAGGTCTTGCCGCAGAACTCACAGGACTTGCTCTTGGCAGGCGGCTGCGGTGGCGGTGTGCCCGCA---GGCATGGGTGGCAGCGGTGGCGTGCTGAGGAACGGGGACTTGGGACTGGGCTGGAA------AGGGTTCAGCAGCCGGTGCATAGGGTTGCCACGGCCTGGGGACACGGGCGGCGGCG---TGGAGCTGTTGCCGGCCAGTTCTCGCAGCCGCCGGGAGAAGTCCATGGCAGGAGAGTCTATGGCCATGGGGTTCAGGCGCATGACTCGGTCGAAGGCACTGGGGTGCTGGGCCACGAGCCCCATCTCCTCTGCACTGAGGCG---------GTGTGGGTCCAAGTGATGGCGTGGCGGTGGGCTGAAGAGCGGTGGCGTACCTGGCAAGCGGCCCT
465 s rn3.chr6      132300723 625 + 147642806 AAGTCGCCATCGGCCGCTTTGAGG---TCACCTGGCAGCTCGCTGGTGCCGGGCTCTGGGGAGCTGGCGGCCGAGAGCCCATCGTCTGAGCGGCCAGCCAGCGAGCCCGCCTTGTGCATGTGCGTCTTCATGTGGCGCTTGAGCTTGCTCGCCTGCGAGCACGCGTGGTCGCACAGCTGGCACTTGTAGGGCTTCTCGCCCGTGTGGCTGCGCCGGTGCACGATGAGATTGCTCTGGAATTTGAAGGTCTTGCCGCAGAACTCACAGGACTTGCTCTTGGCAGGCGGCTGCGGTGGCGGCGTGCCCGTG---GGCATGGGTGGCAGCGGTGGCGTGCTGAGGAACGGGGACTTGGGGCTGGGCTGAAA------AGGGTTCAGCAGCCGGTGCATAGGGTTGCCACGGCCTGGGGACACGGGCGGCGGTG---TGGAGCTGTTACCGGCCAGTTCTCGCAGCCGCCGAGAGAAGTCCATGGCGGGAGAGTCTATGGCCATGGGGTTCAGGCGCATGACTCGGTCGAAGGCACTGGGGTGCTGGGCCACGAGCCCCATCTCCTCTGCACTGAGGCG---------GTGTGGGTCCAAGTGATGGCGTGGCGGTGGGCTGAAGAGCGGTGGCGTACCGGGCAGGCGGCCCT
466 s canFam1.chr8   70560355 631 +  77374719 AAGTCGCCGTCGGCCGCCTTGAGGCCCTCGCCGGCCAGCTCGCTGGTGCCGGGCTCGGGGGAGCTGGCGGCCGAGAGCCCGTCGTCGGAGCGGCCGGCCAGCGAGCCGGCCTTGTGCATGTGCGTCTTCATGTGGCGCTTGAGCTTGCTCGCCTGCGAGCACGCGTGGTCGCACAGCTGGCACTTGTAGGGCTTCTCGCCCGTGTGGCTGCGCCGGTGCACGATGAGATTGCTCTGGAACTTGAAGGTCTTGCCGCAGAACTCGCACGACTTGCTCTTggcgggcggctgcggcggcggcgtgcccccggggggcATGGGCGGCAGCGGCGGCGTGCTCAGGAACGGGGACTTGGGGCTGGGCTGGAA------GGGGTTCAGGAGCCGGTGCATAGGGTTGCCGCGGCCCGGAGACACGGGCGGCGGCG---TGGAGCTGTTGCCCGCCAGCTCGCGGAGCCGCCGCGAGAAGTCCATGGCGGGCGAGTCGATGGCCATGGGGTTGAGGCGCATGACTCGGTCGAAGGCACTGGGGTGCTGGGCGACGAGCCCCATCTCCTCGGCACTGAGGCG---------GTGCGGGTCCAGGTGGTGGCGCGGCGGCGGGCTGAAGAGCGGCGGCGTGCCGGGCAGGCGGCCCT
467 s galGal2.chr5   44594951 631 +  56310377 AAGTCTGTCTCACTGGATTTCAGTCCCTCTCCAGTGAGCTCGCTCGTGCCTGGCTCAGGAGAACTCGTGGTGGACAGTCCATCGTCTGACCTGCCTGTCATGGAGCCAGCTTTATGCATATGCGTTTTCATGTGACGCTTTAGCTTGCTGGCCTGGGAGCAAGCATGGTCACATAGCTGACATTTGTAGGGCTTTTCTCCTGTGTGACTACGCCGGTGGACGATAAGGTTGCTCTGGAACTTGAAGGTTTTCCCACAGAATTCGCAGGACTTACTCTTGGCCTGAGGCTGGGGAGGCGTAGTGCTGCTTGGGGGCATGGGGGGCAGTGGTGGGGTGCTCAAAAAAGGTGATTTAGGACTCGGCTGGAA------AGGATTCAACAGGCGATGCATAGGGTTGGTGCGACTGGGCGAGACTGGCGGAGGGG---TGGAACTGTTTCCTGCCAGCTCTCGAAGCCTTCTGGAGAAATCCATCGCTGGGGACTCAATTGCCATGGGGTTTAAACGCATAACTCTGTCAAAGGCACTGGGATGCTGGGCAACTAACCCCATTTCTTCGGCACTAAGGCG---------ATGTGGATCCAGATGATGACGAGGTGGTGGGCTGAATAGTGGAGGCGTGTTTGGGAGCCGACCCT
468 s fr1.chrUn     275910993 637 + 349519338 AAGTCACCACCGTGGTTCTTCATGC------------GCTCACTTGTGCCTGGCTCCGGGGAACTTGTAGTTGATAGTCCATCATCCGAACGCCCAGTCAGTGAACCAGGCTTGTGCATGTGGGTCTTCATGTGGCGTTTCAGCTTACTCGCCTGAGAACATGCATGGTCACACAGCTGGCACTTGTAGGGTTTCTCTCCGGTGTGGCTTCGGCGATGCACAACCAAGTTGCTTTGGAACTTAAATGTCTTACCACAGAACTCACAGGATTTGACTTTGTTCTGCATCTGTGGAGGGCTAGTGCTGTTTGCGGGAGCCGGTGGTAAGGGAGGAGTGCACACAAAGGGTGACTTTGGCCCAATTTGAAAGGTGTTGGGGTTGAGTAATCGGTGAATATGGTTGGCCCTGCCTGGCGACAGCGGCGGTGTTGTACTGTTGCTATTACCCGCCAATTCACGTAACCTCCTGGAGAAGTCCATGGAGTGGGACTCCATGGACACGGGCGCGAGACGCATCACCTTTTCAAAGGCACTTGGGTGCTGTGAGATGAGACCCATTTCTTCTGTGCTAAGGCATTCTAGCCTATGGGAGTCCAGGTGGTGGCGGGCAGGGGGGCTAACAAATGCAGGCATGTTGGGCAGTCGGTTCT
469 s danRer1.chrUn 103631027 646 + 367113659 AAATCACCATCCCGATTTTTTATACCCTCCCCAGTGACGTCACTAGTGCCTGGCTCAGGTGAGCTGGTGGTGGACAGGCCATCGTCAGAGCGCCCTGTCATGGAACCAGATTTGTGCATGTGGGTCTTCATGTGGCGTTTTAATTTGCTCGCTTGAGAACAAGCGTGGTCACACAATTGGCACTTGTAAGGTTTCTCGCCTGTGTGGCTTCGCCGATGAACAACCAGATTACTCTGAAACTTGAAGGTCTTGCCACAGAACTCGCAAGATTTCGACTTGCCCTGTGTCTGTGGCGGGGTGGTGCTGTTAGGGGGCATGGGAGGCAGTGGAGGGGTGCTCAGAAAGGGTGATTTCGGGCTGGGCTGAAAGGGGTTGGGATTGAGAAGGCGATGCATAGGGTTAGCACGGCTCGGTGACAATGGTGGAGTGG---AATTGTTGTTTCCAGCAAGCTCTCTCAATCGGCGGGAGAAATCCATGGACTGGGACTCCATGGCCATGGGTGTCATGCGCATCACTCTTTCGAAGGCACTGGGATGCTGGGAGATTAAACCCATTTCCTCTGCGCTAAGGCGTTCCAGGCGATGGGGATCTAAATGATGGCGTGGAGGGGGGCTGACAAAGGGAGGCGTATTGGGGATACGGTTTT
470
471 a score=309091.0
472 s hg17.chr14     98712006 203 + 106368585 CGCCGAAGCCC---G-GGTGGTCCCGCAGG--ATGGGGCCCGTCATGCGCAGCAGGTTGAAGGGGTTGCTG---TCGCCCAGGAAATTCATGAGCGGGGACTGCGCCACGGCCTCCGGCCCGAGCGGCGGCGGGATGGTGAGCCGCGGCGTGAGCGAGCTGCTGGCCGGCCCGGGCTCCAGGTAGATGCGGAAGCCGTGCGTGTTCTGCGCG
473 s panTro1.chr15  99209872 203 + 106954593 CGCCGAAGCCC---G-GGTGGTCCCGCAGG--ATGGGGCCCGTCATGCGCAGCAGGTTGAAGGGGTTGCTG---TCGCCCAGGAAATTCATGAGCGGGGACTGCGCCACGGCCTCCGGCCCGAGCGGCGGCGGGATGGTGAGCCGCGGCGTGAGCGAGCTGCTGGCCGGCCCGGGCTCCAGGTAGATGCGGAAGCCGTGCGTGTTCTGCGCG
474 s mm5.chr12     102665971 203 + 115071072 CACCGAAGCCA---G-GGTGGTCCCGCAGG--ATGGGGCCCGTCATGCGCAGCAGGTTGAAAGGATTGCTG---TCCCCCAGGAAATTCATGAGTGGGGACTGCGCCACGGTCTCCGGCCCGAGCGGTGGCGGGATGGTGAGCCTGGGCGTGAGCGAGGTGCTGGCCGGCCCAGGCTCCAGGTAGATTCGGAAGCCATGTGTGTTCTGTGCG
475 s rn3.chr6      132301348 203 + 147642806 CTCCGAAGCCG---G-GGTGGTCCCGCAGG--ATGGGGCCCGTCATGCGCAGCAGGTTGAAAGGATTGCTG---TCCCCGAGGAAATTCATGAGTGGGGACTGCGCCACGGCCTCCGGCCCGAGCGGCGGCGGGATGGTGAGCCTGGGCGTGAGCGAGGTGCTGGCGGGCCCGGGCTCCAGGTAGATGCGGAAGCCATGCGTGTTCTGCGCA
476 s canFam1.chr8   70560986 203 +  77374719 CGCCGAAGCCC---G-GGTGGTCCCGCAGG--ATGGGGCCCGTCATGCGCAGCAGGTTGAAGGGGTTGCTG---TCGCCCAGGAAATTCATGAGCGGGGACTGGGCCACGGCCTCGGGTCCCAGCGGCGGCGGGATGGTGAGCCGCGGCGTGAGCGAGCTGCTGGCCGGCCCGGGCTCCAGGTAGATGCGGAAGCCGTGCGTGTTCTGCGCG
477 s galGal2.chr5   44595582 203 +  56310377 CACCAAAGCCA---G-GATGTTCACGCAAA--ATGGGTCCTGTCATCCGCAGAAGATTAAAAGGGTTGTTG---TCTCCAAGGAAATTCATCAGCGGGGACTGTGCAACAGTCTCTGGTCCCAGAGGAGGAGGGATGGTGATGCGTGGAGTAAGGGAACTGTTGGAAGGGCTTGTTTCCAGGTAGATGCGGAATCCATGTGTGTTCTGGGCA
478 s fr1.chrUn     275911630 206 + 349519338 CGATAAAAGCA---GAGGCGGGCTCTCGAGTCACTGGGCCTGTCATTCTTAAGAGCTGGAAAGGGTTGTTT---TCCCCCAGAAAGTTGATGAGGGGGGGATGAGGGATGCAGTCATTGCCCATGGGTGGAGGCATGGTGATGCGTGGAGTTAGGGCTGCGCTCGAGGGATCTGACTCCAGGTATATGCGAATGCCATGCGTGTTTTGAGCA
479 s danRer1.chr5    4283993 209 +  40038624 CGATGTAGCCATGCG-GCGGTTCTCGTAGC--AGTGGGGCACCCATACGCAACAGCTGGAAAGGGTTGCTGCCATCACCCAGAAAGCTGGCAAGTGGGGAACGAGGCAAGGCATCAGCCCCCAGTGGTGGAGGAAGAGCCATGCGAGGGGTAAGAGAGCAGCTAGTAGGGTGGGTGTCCAGGTAGATGCGTATCCCATGGGTGTTCTGTGCA
480
481 a score=170742.0
482 s hg17.chr14     98712209 76 + 106368585 TGCTGCAGCAGGAACCACGCGCTGTTGAAGGGCTGCTTGCATGTTGTGCAAATGTAGCTGGAAGGCTCATCTTT---AC
483 s panTro1.chr15  99210075 76 + 106954593 TGCTGCAGCAGGAACCACGCGCTGTTGAAGGGCTGCTTGCATGTTGTGCAAATGTAGCTGGAAGGCTCATCTTT---AC
484 s mm5.chr12     102666174 76 + 115071072 TGCTGCAGCAGGAACCAGGCGCTGTTGAAGGGCTGCTTGCATGTTGTGCAAATGTAGCTGGAAGGCTCATCTTT---AC
485 s rn3.chr6      132301551 76 + 147642806 TGTTGCAGCAGGAACCAGGCGCTGTTGAAGGGCTGCTTACATGTTGTGCAAATGTAGCTGGAAGGCTCATCTTT---AC
486 s canFam1.chr8   70561189 76 +  77374719 TGCTGCAGCAGGAACCACGCGCTGTTGAAGGGCTGCTTGCATGTTGTGCAAATGTAGCTGGAAGGCTCATCTTT---AC
487 s galGal2.chr5   44595785 76 +  56310377 TGCTGAAGCAAGAACCAAGCGCTATTAAAAGGCTGCTTGCATGTTGTGCAAATATAGCTTGAAGGCTCATCTTT---AC
488 s fr1.chrUn     275911836 79 + 349519338 TGCTGTAGCAGGAACCAGGCATTGGAAAACATCTGCTTACACGTGGTGCAGATATAACTGGAGGGCTCATCCCTCTGAC
489 s danRer1.chrUn 103631683 76 + 367113659 TGCTGCAGAAGGAACCAGGCGTTGTAAAAGGGTTGTTTGCACGTTGTGCATATGTAACTTGAGGGTTCATCTCT---AC
490
491 a score=412979.0
492 s hg17.chr15     41486872 188 + 100338915 TTAGTGAGAAACATAATCGTGTTTATATTTTGGATGCTGCTTGAATCCAATTCTCTCCCCAACAATGAGGCACTGGATCACCCACTCTTGTGACACCACAGGCAGCTGCAATGCTTCAGCACACTTCAGCACCGAGGCTGGGCATGAGGGGTCCGTCACCACCACATCAAATACCCCTAAAGCAATAT
493 s panTro1.chr16  41478602 188 + 101535987 TTAGTGAGAAACATAATCGTGTTTATATTTTGGATGCTGCTTGAATCCAATTCTCTCCCCAACAATGAGGCACTGGATCACCCACTCTTGTGACACCACAGGCAGCTGCAATGCTTCAGCACACTTCAGCACCGAGGCTGGGCATGAGGGGTCCGTCACCACCACATCAAATACCCCCAAAGCAATAT
494 s mm5.chr2      120979995 188 + 181686250 TTAGTGAGAAACATAATCATGTTTATATTTTGGATGCTGCTTGAATCCAATTCTCTCCCCAACAATGAGGCACTGGATCACCCATTCTTGTGATACCACAGGCAGTTGCAAGGCTTCAGCACACTTGAGCACCGAGGCTGGGCATGAGGGGTCTGTCACCACCACATCAAATACCCCTAAAGCAATGT
495 s rn3.chr3      107897216 188 + 170969371 TTAGTGAGAAACATAATCATGTTTGTATTTTGGATGCTGCTGGAATCCAATTCTCTCCCCAACAATGAGGCACTGGATCACCCATTCTTGTGATACCACAGGCAGCTGCAAGGCTTCAGCACACTTGAGCACCGAGGCTGGGCATGAGGGGTCTGTCACCACCACATCAAATACCCCTAAAGCAATGT
496 s canFam1.chr30  13173383 188 +  43165425 TTAGTGAGAAACATAATCATGTTTGTATTTTGGATGCTGCTTGAATCCAATTCTCTCCCCAACAATGAGGCACTGGATCACCCACTCTTGTGACACCACAGGCAGCTGCAATGCTTCAGCACACTTCAGCACCGAGGCTGGGCATGAGGGATCCGTCACCACCACGTCAAATACCCCTAAAGCAATAT
497 s galGal2.chr10     80159 188 -  20909726 TTAACGAGGGACATAGTCATGTTTGTATTTTGGATGCTTGTTGTAGCCTACTCTCTCTCCAGCAATAAGGCTCTGGATCACCCACTCTTGTGAGACAACAGGCAACCTTAATGCTTCTGCGCACTTCAAGACAACAGCTGGGCAGGAAAGATCAGTCACCACCACATCATAAACACCCAATGCAATAT
498 s fr1.chrUn     325491827 188 - 349519338 GGATTATGACGCGTAGTTGTGGCGATACCGAGGCAGGCTATGGAAACCCAGGCACTCCCCACAGATCACACTCTGGATGAGCCACTCGGGAGACACCAGCGGCACTTCCTGTGATGCCATGTTCTTCTCCACTAGTGGGGAGCAGGTGTGGTCCGTCACCACAACGTCAAACTTGCCGGCAGGAATGT
499 s danRer1.chrUn 117181337 182 - 367113659 TTACGTAGATGT---GTTGTGGCAGAATTCAGAATTGCTGTCGAAGTTGAGGCACTTTCCACAGATCAAGCTCTGAATCAGCCACTCCAGAGAGACAACAGGCATGTTTGAGGCC---ACACGCTTCACTTCCTTTGATGTACATGCTGATGATGTCACTGCCACATCAAACTTCACATCTGGAATGT
500
501 a score=145507.0
502 s hg17.chr15            41673708 149 + 100338915 ATGGCTGGTCCCTTCTCCCGTCTGCTGTCCGCCCGCCCGGGACTCAGGCTCCTGGCTTTGGCCGGAGCGGGGTCTCTAGCCGCTGGGTTTCTGCTCCGACCGGAACCTGTACGAGCTGCC---AGTGAACGACGGAGGCTGTATCCCCCGAG
503 s panTro1.chr16_random  12462177 149 +  32210112 ATGGGTGGTCCCTTCTCCCGTCTGCTGTCCGCCCGCCCGGGACTCATGCTCCTGGCTTTGGCCGGAGCGGGGTCTCTAGCCGCTGGGTTTCTGCTCCGACCGGAACCTGTACGAGCGGCC---AGTGAACGACGGAGGCTGTATCCCCCGAG
504 s mm5.chr2             121140425 152 + 181686250 ATGGCTGGTCCCTTCTCCCGTCTGCTGTCTGCCCGCCCTGGACTCAGGCTCCTGGCTTTGGCTGGAGCTGGGTCTCTCACCGCCGGGATTCTGCTCCGCCCGGAATCTGTAGGAGCTGCCGCTGCTGAACGGAGGAGACTGTATCCCCCGAG
505 s rn3.chr3             108059196 152 + 170969371 ATGGCTGGTCCCTTCTCCCGTCTGCTGTCTGCCCGCCCCGGACTCAAGCTCCTGGCTTTGGCTGGAGCTGGGTCTCTCGCCGCCGGGATTCTGCTCCGTCCGGAATCTGTACGAGCGGCCACCGGTGAACGGAGGAGACTGTATCCCCCGAG
506 s canFam1.chr30         13349240 149 +  43165425 ATGGCTGGTCCCTTCTCTCGTCTGCTGTCCGCGCGCCCGGGGCTCAGGCTCCTAGCTTTGGCTGGAGCTGGGTCTCTAGCCGCTGGGTTTCTGCTCCGCCCGGAACCTGTAAGAGCCGCC---AGTGAACGACGGAGGCTGTATCCCCCAAG
507 s galGal2.chrZ          28834466 152 +  33651169 ATGGCTGGCACCTTTGGTCGTCTCCTGGCTGGCCGTGTGACTGCTGCACTTTTTGCAGCAGCAGGCACAGGGGTACTCACCACTGGGTACCTCCTCAACCAGCAAAATGTGAAAGCTACTGTGCATGAGAAGCGGAAGCTCTTCCCTCCCAG
508 s fr1.chrUn             97204237 143 - 349519338 ATGGCGAGTAGCTTCTCCAGGGTTCTGATCTCCAG---AAACATCCGGATCCTGTCGCTGTTGGG---GGGTTCGGTCACAGCCGGGATCCTGCTGCAGCGGCACCATGTCGGCGCCGAC---GGCCCCACACGGAGGAGGTACCCCGCCAG
509 s danRer1.chr4            497203 149 -  30025136 ATGGCTGGTTCAATTGGCAAGATGATGTCGAGCCGCACCACTGGCCTGCTCATGGCAAGCCTCGGAGCTGGTGCTTTGGCGACCGGATATATGATGAGTGACAGTGCTGCAATCTCTGCG---GACGAGAAGAGGAAACTCTACCCTCCCAG
510
511 a score=250959.0
512 s hg17.chr15     41679161 89 + 100338915 TCATAGCAGGTGGCCAAGGAAGCTGATAGTCAATACCAGGGACCAGGAAGGTCGTGACCAGTCCTGGAGGCCCCAGGCTGTACTTCGAC
513 s panTro1.chr16  41682794 89 + 101535987 TCATAGCAGGTGGCCAAGGAAGCTGATAGTCAATACCAGGGACCAGGAAGGTCGTGACCAGTCCTGGAGGCCCCAGGCTGTACTTCGAC
514 s mm5.chr2      121145551 89 + 181686250 TCATAATAGGTGGCCAAAAATGCTGACGGGCAATGCCAGGGCCCAGGAGGCTTGGAACCAGTCGTAGAGACCCCAGGCTGAGTTTCGAC
515 s rn3.chr3      108064239 89 + 170969371 TTATAATAGGTGGCCAAAAAAGCTGATGGTTAGTGTCAGAGCCCAGGAAGCATGGAACCAGTCACAGAGACCCCAGGCTGAGCTTCGAC
516 s canFam1.chr30  13354361 89 +  43165425 TCATATCAGGTTGCCAAGGAAGCAGATGGTCAATGCCATGGCCCAGGAGGGTTGTGACCAGTCCTGAAGGCCCCAGGCTGTGCTTCGAC
517
518 a score=50892.0
519 s hg17.chr15     41826029 40 + 100338915 ATGCGCCTCCGCCGCCTAGCGCTGTTCCCGGGTGTGGCGC
520 s panTro1.chr16  41735415 40 + 101535987 ATGCGCCTCCGCCGCCTAGCGCTGTTCCCGGGTGTGGCGC
521 s mm5.chr2      121195614 40 + 181686250 ATGCGCTTCAGCTGCCTAGCTCTGCTCCCGGGCGTGGCGC
522 s rn3.chr3      108117268 40 + 170969371 ATGCGCTTCAGCTGCCTTGCGCTGCTCCCGGGCGTGGCGT
523 s canFam1.chr30  13397631 40 +  43165425 ATGCGCCCCCGCTGCCGAGCGCTGCTCCCGGGCGTGGCGC
524
525 a score=11434.0
526 s hg17.chr15     41826069 20 + 100338915 TGCTTCTTGCCGCG---------------GCCCGC
527 s panTro1.chr16  41735455 20 + 101535987 TGCTTCTTGCCGCG---------------GCCCGC
528 s mm5.chr2      121195654 20 + 181686250 TGCTGCTCGCCTCG---------------GCCCGT
529 s rn3.chr3      108117308 35 + 170969371 TGCTGCTCGCCTCGGCCCTCCTCGCCTCCGCCCTC
530 s canFam1.chr30  13397671 20 +  43165425 TGCTTTTCGCCGCG---------------GCCGGT
531 s fr1.chrUn      97210657 23 - 349519338 TGCTTTTAGCAGCG------------CTCACCGGC
532
533 a score=118454.0
534 s hg17.chr15     41826089 107 + 100338915 CTCGC---CGCTGCCTCCGACGTGCTAGAACTCACGGACGACAACTTCGAGAGTCGCATCTCCGACACGGGCTCTGCGGGCCTCATGCTCGTCGAGTTCTTCGCCCCCTG
535 s panTro1.chr16  41735475 107 + 101535987 CTCGC---CGCTGCCTCCGACGTGCTAGAACTCACGGACGACAACTTCGAGAGTCGCATCTCCGACACGGGCTCTGCGGGCCTCATGCTCGTCGAGTTCTTCGCCCCCTG
536 s mm5.chr2      121195674 107 + 181686250 CTCGC---CGCCGCCTCCGATGTGTTGGAACTGACGGACGAAAACTTCGAGAGTCGCGTCTCCGACACGGGCTCGGCGGGGCTCATGCTAGTCGAGTTCTTCGCCCCCTG
537 s rn3.chr3      108117343 107 + 170969371 CTCGC---CTCCGCCTCAGACGTGTTGGAACTGACGGACGAAAACTTCGAGAGTCGCGTCTCCGACACGGGCTCAGCTGGGCTCATGCTAGTCGAGTTCTTCGCCCCATG
538 s canFam1.chr30  13397691 107 +  43165425 CTCGC---CTCTGCCTCCGACGTGCTGGAACTCACTGACGACAACTTCGAGAGTCGCATCTCCGACACGGGCTCTGCGGGCCTCATGCTCGTCGAGTTCTTCGCTCCCTG
539 s fr1.chrUn      97210680 101 - 349519338 TTCACGCAGGCCGCCAGTGATGTGCTGGAGTTCACGGATAACGATTTCGAAAGTAAAATCGGAGACC---------ATGAAATTATTCTTGTGGAGTTTTTCGCACCCTG
540 s danRer1.chr17  15314657  98 +  35757233 CTCGT---GGAGGGCAGCGATGTGCTGGAGCTCGGAGATTCTGACTTTGA---------CCGGAGCGCAGGCATGCATGACACTCTGCTAGTGGAGTTCTTCGCACCTTG
541
542 a score=88002.0
543 s hg17.chr16             142908 95 +  88827254 ATG----TCTCTGACCAAGACTGAGAGGACCATCATTGTGTCCATGTGGGCCAAGATCTCCACGCAGGCCGACACCATCGGCACCGAGACTCTGG-AGAG
544 s panTro1.chr18          150233 95 +  83875239 ATG----TCTCTGACCAAGACTGAGGGGACCATCATTGTGTCCATGTGGGCCAAGATCTCCACGCAGGCCGACACCATCGGCACCGAGACTCTGG-AGAG
545 s mm5.chr11            32172234 95 + 121648857 ATG----TCTCTGATGAAGAATGAGAGAGCTATCATCATGTCCATGTGGGAGAAGATGGCTGCTCAGGCCGAGCCCATTGGCACTGAGACTCTAG-AGAG
546 s rn3.chr10            95139962 95 - 110733352 ATG----TCTCTGATGAAGAATGAGAGAGCTATCATCATGTCCATGTGGGACAAAATGGCGCCTCATGCAGAGCCCATTGGCACTGAGACTCTGG-AGAG
547 s canFam1.chr6         37152261 96 -  79106041 ATG----TCTCTGACCAAGGCCGAGAGGACCATCATCCTGTCCATGTGGGGCAAGATCTCCACCCAGGCGGATGCTATTGGCACCGAGGCCCTGGAAGAG
548 s galGal2.chr14        13958597 95 +  20603938 ATG----GCACTGACCCAAGCTGAGAAGGCTGCCGTGACCACCATCTGGGCAAAGGTGGCTACCCAGATTGAGTCCATTGGGCTGGAATCACTGG-AGAG
549 s fr1.chrUn           269729641 95 + 349519338 ATG----AGTCTGAGCAGGACTGACAAGGAGGCCGTGAAGGCCATTTGGGCCAAAATGTCCAAGAGCATTGATGTCATCGGGGCCGAGGCGTTTG-GCAG
550 s danRer1.chrFinished  33475840 95 -  40167097 ATGAGTCTCTCTGCCAAAGAC----AAAGCTGCCGTCAAAACCCTGTGGGCCAAGATCGCTGGAAAGGCTGACGACATCGGACACGATGCTCTCT-CCAG
551
552 a score=39370.0
553 s hg17.chr16       179963 35 +  88827254 TTACTTGTATTTCGCACTTCGGTCCCGGGAAGCCC-
554 s panTro1.chr18    195782 35 +  83875239 TTACTTGTATTTCGCACTCCGGTCCCGGGAAGCCC-
555 s mm5.chr17      68693958 35 -  93559791 TTACTTGTATTTTGTACTCCGGTCCCTGGAAGCCC-
556 s rn3.chr10      95183773 35 - 110733352 TTACTTGTATTTTGTACTCCGGTCCCTGGAAGCCC-
557 s canFam1.chr6   37185997 35 -  79106041 TTACTTGTATTTCGCACTCCGGTCCCTGGAAGCCC-
558 s fr1.chrUn     145482403 32 + 349519338 TTACTTGTGTCTGGAGCCGTGCTC----GTGGCTGT
559
560 a score=142911.0
561 s hg17.chr16       179998 137 +  88827254 GACGATGTCCCCGGCTGTGGCTCCGGGAACGGCTGCGGTGGCGCCGATGTCTATCTCGGGACCGGGACCGGGACAATTTCCGTCGC---TCTCGGGAGGTAGATCTTGACCGCCTCCGACGCCGATCCCGGGAGCGTGAC
562 s panTro1.chr18    195817 137 +  83875239 GACGATGTCCCCGGCTGTGGCTCCGGGAACGGCTGCGGTGGCGCCGATGTCTATCTCGGGACCGGGACCGGGACAATTTCCGTCGC---TCTCGGGAGGTAGATCTTGACCGCCTCCGACGCCGATCCCGGGAGCGTGAC
563 s mm5.chr17      68693993 137 -  93559791 GGCGGTGACCCCGGCTGTGGCTCCGGGAACGGCTGCGATGGCGCCTGTATCTATCTCGGGATCTGGAACGGGAAAACTTCCGCCGC---TCTCTGGAGGTAGACCTAGACCGCCTCCGTCGACGATCCCGGGAGCGTGAC
564 s rn3.chr10      95183808 137 - 110733352 GTCGGTGACCCCGGCTGTGGCTCCGGGAACGGCTGCGATGTCGCCGGTATCTATCTCGGGACCTGGAACGGGAAAACTTCCGCCGC---TCTCGGGAGGTAGACCTAGACCGCCTCCTTCGACGATCCCGGGAACGTGAC
565 s canFam1.chr6   37186032 137 -  79106041 GGCGGTGGCCCCGGCTGTGGCTCCGGGAACGGCTGCGGTGGCGCCGGTGTCTGTCTCGGGACCGGGACCGGGATGACTTTCGTCGC---TCCCTGGAGGTAGATCTGGACCTCCTCCGACGCCGGTCCCGGGAGCGTGAC
566 s galGal2.chr1  142364883 137 - 188239860 GGCTGCGACTCCGGCTGCGGCTGTTGGAGCGAGACCTGTGGCGATGGCGTTTCTCACGGGATTTAGAGCGAGTTCTTCTTTTCCGT---TCCCTGGAGGCTGAGCGAGAGCGATGTCTGCGACGATCTCGGGACCTAGAT
567 s fr1.chrUn     145482435 134 + 349519338 GACGGTGTCCTCGGTTGCGGGAGCCCGATCTGCTGCGATGCCTCCTCCTCCTGTCCCTGGAGCGCGAACGGGAA------CGGCGCTTGTCTCGAGACGTCGAACGCGAGCGTCTCCTCCTGCGGTCACGAGAGCGGGAC
568
569 a score=23245.0
570 s hg17.chr16      244413 4 +  88827254 ATGT
571 s panTro1.chr18   262355 4 +  83875239 ATGT
572 s mm5.chr17     68753542 4 -  93559791 ATGA
573 s rn3.chr10     95244723 4 - 110733352 ATGA
574 s canFam1.chr6  37249961 4 -  79106041 ACGA
575
576 a score=198450.0
577 s hg17.chr16      244417 264 +  88827254 TGGACCACAAGGACTTAGAGGCCGAAATCCACCCCTTGAAAAATGAAGAAAGAAAATCGCAGGAAAATC-TGGGAAATCCATCAAAAAATGAGGATAA----CGTGAAAAGCGCGCCTCCACAGTCCCGGCTCTCCCGGTGCCGAGCGGCGGCGTTTTTTCTTTCATTGTTTCTCTGCCTTTTTGTGGTGTTCGTCGTCTCATTCGTCATCCCGTGTCCAGACCGGCCGGCGTCACAGCGAATGTGGAGGATAGACTACAGTGCCGCTG
578 s panTro1.chr18   262359 264 +  83875239 TGGACCACAAGGACTTAGAAGCCGAAATCCACCCCTTGAAAAATGAAGAAAGAAAATCGCAGGAAAATC-TGGGAAATCCATCAAAAAATGAGGATAA----CGTGAAAAGCGCGCCTCCACAGTCCCGGCTCTCCCGGTGCCGAGCGGCGGCGTTTTTTCTTTCATTGTTTCTCTGCCTTTTTGTGGTGTTCGTCGCCTCATTCGTCATCCCGTGTCCAGACCGGCCGGCGTCACAGCAAATGTGGAGGATAGACTACAGTGCCGCTG
579 s mm5.chr17     68753546 264 -  93559791 TGGACAACAAGGACTTAGAAGCTGAAATACACCCCTTGAAGAATGAGGACAAGAAATCACAGGAAAACC-CAGGAAACCTACCAAGAAACGAAGATAA----CTTGAAGAGCAAGCCTGTGCCTTCCCGCTTGTCCCGGTGCCGCACAGTGGCATTTTTCCTTTCCCTGTTCACCTGCCTCTTCGTGGTGTTTGTCCTGTCTTTCATCATCCCATGTCCAGACCGTCCCTCCTCACAGGGCACGTGGAAGCTTGACTACAACAATGCAG
580 s rn3.chr10     95244727 264 - 110733352 TGGATGACAAGGATCTAGAAGCTGAAATACATCCCTTGAAGAATGAGGACAAAAAGTCACAGGAAAACC-TAGGAAACCTACCAAAGACCGAGGACAA----CTTGAAGAACAAGCCTGTGCCTTCTCGCTTGTCCCGGTGTCGCACGGTGGCATTTTTCCTTTCCCTGTTCATCTGTCTCTTTGTGGTGTTTGTCCTCTCTTTCATCATCCCATGCCCAGACCGACCGTCCTCTGAGGACAAGTGGAGGCTGGACTACGACTATGCAG
581 s canFam1.chr6  37249965 264 -  79106041 TGGACAGCAAGGACCTAGAAGCCGAAATCCACCCCCTGAGGAACGAAGACAAGAGGCTGCCCGAGACCC-CGGGAAACCCGGGCCACGCAGACGAGAA----GCTGAAAAGCTCGCCCCGGCAGCCCCGCCTCTCCCGGTGCCGCACCGTTGTGTTTTTTCTTTCACTGTTTGTCTGCCTGTTCGTAGTGTTCGTGGTTTCGTTCATCATCCCGTGCCCGGAACGGCCCGTGTCGCAGGGGATGTGGCGGATAGACTACAGCGCGGCAG
582 s galGal2.chr14  6505218 264 -  20603938 TGGATAACAAAGACTCAGAAGCTGAGATCCACCCCCTGAAGACAGAGGACGTGAAAGCTCAAGAGAACCATGAGAACTCTGTTGA-----GAGGAGAATCATCATCAAGCAGTCGTCGCAGCTGTCTCGGCTGTCCCGCTGGCGCACCGCCGCCTTCTTCATCTCATTATTTCTGTGTCTCATCATCGTGTTTGCCTTCTCCTTTATCATTCCTTGCCCTGAGAGGCCTGTCTCAGAGAGAACGTGGCTCCGAAACTATGACAATGCAG
583
584 a score=3883.0
585 s hg17.chr16       259268 28 +  88827254 C-TAGGCCACCCCAT----CTCCACCCCCAGGG
586 s mm5.chr17      68763356 29 -  93559791 CCTACTACTCCCCAT----CGGCACCTTCAGGG
587 s rn3.chr10      95254895 29 - 110733352 CTTAGTCCTCCTCAT----TGCCACCTGCAGGG
588 s canFam1.chr6   37261496 28 -  79106041 -CTAGGTGCCCCTGT----CCCCGCACGCAGGG
589 s fr1.chrUn      32270640 32 + 349519338 -CTTGGCCTGTCCGTCCTGCTCCGCCATCCGGG
590 s danRer1.chrNA 221970878 28 + 390413307 CCCTGGGGCCTCTAT-----TGCAAGTCCAGGG
591
592 a score=-1898.0
593 s hg17.chr16     259296 9 +  88827254 CCACAAGCC
594 s mm5.chr17    68763385 9 -  93559791 GAACTGGTT
595 s rn3.chr10    95254924 9 - 110733352 GAGCTGGTA
596 s canFam1.chr6 37261524 9 -  79106041 TCACTTGCA
597 s fr1.chrUn    32270672 9 + 349519338 CCGATGCCT
598 s danRer1.chr1  5581271 9 +  40858791 CCATCATCC
599
600 a score=2916.0
601 s hg17.chr16      259305 2 +  88827254 GC
602 s mm5.chr17     68763394 2 -  93559791 GC
603 s rn3.chr10     95254933 2 - 110733352 GC
604 s canFam1.chr6  37261533 2 -  79106041 GC
605 s galGal2.chr14  6519763 2 -  20603938 GC
606 s fr1.chrUn     32270681 2 + 349519338 GC
607 s danRer1.chr1   5581280 2 +  40858791 TC
608
609 a score=1053.0
610 s hg17.chr16      259307 19 +  88827254 TG---TGGGCTCCACAGGGGTG
611 s mm5.chr17     68763396 19 -  93559791 TG---CAGGCTCCCTGGGGGTA
612 s rn3.chr10     95254935 19 - 110733352 TG---CAGGCTCCCCAGAGGTC
613 s canFam1.chr6  37261535 22 -  79106041 AGTCACAGGCTCTGCAGATGTG
614 s galGal2.chr14  6519765 19 -  20603938 CT---CGGTGTCACCGGCGGGC
615 s danRer1.chr1   5581282 13 +  40858791 TG---TGG------TATGGGTG
616
617 a score=-178.0
618 s hg17.chr16    259307 28 + 88827254 TGTGGGCTCCACAGGGGTGGGAAGGAGT
619 s danRer1.chr1 5581282 19 + 40858791 TGTGG------TATGGGTGACGAGA---
620
621 a score=499.0
622 s hg17.chr16      259326 3 +  88827254 GGA
623 s panTro1.chr18   279072 3 +  83875239 GGG
624 s mm5.chr17     68763415 3 -  93559791 GAC
625 s rn3.chr10     95254954 3 - 110733352 GAC
626 s canFam1.chr6  37261563 3 -  79106041 GGA
627 s galGal2.chr14  6519784 3 -  20603938 AGG
628
629 a score=4058.0
630 s hg17.chr16      259329 6 +  88827254 AGGAGT
631 s panTro1.chr18   279075 6 +  83875239 AGGAGT
632 s mm5.chr17     68763418 6 -  93559791 TGGAGA
633 s rn3.chr10     95254957 6 - 110733352 TGGAGA
634 s canFam1.chr6  37261566 6 -  79106041 AGGAGC
635 s galGal2.chr14  6519787 6 -  20603938 AGCAGG
636 s danRer1.chr1   5581295 6 +  40858791 ACGAGA
637
638 a score=70372.0
639 s hg17.chr16      259335 48 +  88827254 GCAGGGCTGGGGCTCGAGTGCCGTGGCCTCCACGTAAACGGGAACACG
640 s panTro1.chr18   279081 48 +  83875239 GCAGGGCTGGGGCTCGAGTGCCGTGGCCTCCACGTAATTGGGAACACG
641 s mm5.chr17     68763424 48 -  93559791 GCAGGGCTGGGGCTTGAGTGCAGAGGCTTCCGCAAGAATGGAAATGGC
642 s rn3.chr10     95254963 48 - 110733352 GCAGGGCTGGGACTTGAGTGCAGAGGCTTCCGCAAGAATGGGAATGGC
643 s canFam1.chr6  37261572 48 -  79106041 GTGGGGCTGGGGCTCGGGTGTGGCGGCTTCCGCAGGAACGGAAAGGCC
644 s galGal2.chr14  6519793 48 -  20603938 GCCGGGCTGGGGCTGGAGTGTCGCTGCTTGCGCATGAAGGGGAACACC
645 s fr1.chrUn     32270683 48 + 349519338 GCGGGGGAGGGGCTGGCGTGCCGCTGGCGTCTCATGAAGGGGAAGACG
646 s danRer1.chr1   5581301 48 +  40858791 GCAGGCGAGGGGCTGGAGTGGCGCTGCCGACGCATGAACGGGAACACA
647
648 a score=5348.0
649 s hg17.chr18     23786114 2 +  76117153 TC
650 s panTro1.chr17  19719396 2 +  73346066 TC
651 s mm5.chr18      16960413 2 +  91083707 TC
652 s rn3.chr18       8050213 2 +  87338544 TC
653 s canFam1.chr7   19431300 2 -  83037113 TC
654 s galGal2.chr2  103976638 2 + 147590765 TC
655 s fr1.chrUn     291830820 2 - 349519338 TC
656 s danRer1.chrNA 203940100 2 - 390413307 TC
657
658 a score=389078.0
659 s hg17.chr18     23786116 205 +  76117153 AGTCATCA---CCTCCACCATACATGTCAGCAAGTTTCTTGAACCGTGGCCCCCAGTCGTTCAGGTAATCATAGTCCTGCTCACCACCACTACTTGAGGAATTAAGGGAGCTCAAGGACCCAGCAGTGGAGCCACTGCCTTCATAGTCAAACACTAACAGGGAGTCATATGGTGGAGCTGTGGGGTCATTGTCAGCCGCTTTAAGGCC
660 s panTro1.chr17  19719398 205 +  73346066 AGTCATCA---CCTCCACCATACATGTCAGCAAGTTTCTTGAACCGTGGCCCCCAGTCGTTCAGGTAATCATAGTCCTGCTCACCACCACTACTTGAGGAATTAAGGGAGCTCAAGGACCCAGCAGTGGAGCCACTGCCTTCATAGTCAAACACTAACAGGGAGTCATATGGTGGAGCTGTCGGGTCATTGTCAGCCGCTTTAAGGCC
661 s mm5.chr18      16960415 205 +  91083707 AGTCGTCA---CCACCGCCGTACATGTCCGCCAGTTTCTTGAAGCGGGGTCCCCAGTCATTCAGGTAGTCATAGTCCTGGTCCCCACCGCTACTGGAGGAGTTGAGGGAGCTCAAGGAGCCAGCCGTGGAGCCGCTGCCCTCGTAGTCAAAGACTAAGAGGGAGTCATACGGTGGCGCCGTGGGGTCGTTGTCAGCAGCTTTAAGGCC
662 s rn3.chr18       8050215 205 +  87338544 AGTCATCA---CCACCACCATACATGTCGGCCAGCTTCTTGAAGCGGGGTCCCCAGTCATTCAGGTAGTCATAGTCCTGGTCCCCGCCGCTGCTGGAGGAGTTGAGAGAGCTCAAGGAGCCAGCCGTGGAGCCGCTGCCCTCATAGTCGAAGACTAAAAGGGAGTCATATGGTGGCGCCGTGGGGTCATTGTCAGCAGCTTTAAGGCC
663 s canFam1.chr7   19431302 205 -  83037113 AGTCATCA---CCTCCACCATACATGTCAGCAAGTTTCTTGAACCGTGGCCCCCAGTCGTTCAGGTAGTCATAGTCCTGCTCGCCACCACTACTTGAAGAATTAAGGGAGCTCAAAGACCCAGCGGTAGAGCCACTGCCTTCGTAGTCAAAGACTAAGAGGGAGTCATATGGTGGAGCTGTGGGATCATTGTCAGCAGCTTTAAGGCC
664 s galGal2.chr2  103976640 205 + 147590765 AGTCATCA---CCTCCACCGTACATGTCAGCAAGTTTCTTGAAACGTGGGCCCCAGTCATTTAGGTAGTCATAGTCTTGCTCACCACCGCTACTTGAGGAATTAAGAGAGCTCAAGGATCCAGCAGTGGAGCCGCTTCCTTCATAGTCAAAGACTAAGAGGGAATCGTATGGCGGGGCTGTAGGGTCGTTGTCGGCTGCTTTAAGTCC
665 s fr1.chrUn     291830822 205 - 349519338 AGTCATCGTCCCCTCCACCGTACAGGTCGGCCAGCTTCTTGAAGCGGGGGCCCCAGTCGTTGAGGTAGTCGTAGTCCTGGTCGCCCGAGCTGAT---GGAGTTGAGCGAGCTGACGGAGCCGGCTGTCGAGCCGGTGCCCTCGTAGTCGAACACCAGCAGGGAGTCGTAGGGAGGGGCCGTGGGGTCGTTATCCGCTGCTCTCAGACC
666 s danRer1.chrUn 257546281 205 - 367113659 AGTCGTCG---TTACCTCCGTACATGTCGGCGAGTTTGCGGAAGCGAGGGCCCCAATCGTTGAGGTAGTCATAGTCCTGGTCTCCTCCGCTGCTGGACGAGTGAAGGGAGCTTAGTGAGCCGGCCGTGGAGCCGCTGCCCTCGTAGTCAAACACCAGCAGGGAGTCATACGGAGGGGCCGTGGGATCGGTGTCGGCTGCCTTGAGGCC
667
668 a score=581809.0
669 s hg17.chr18     59406881 165 +  76117153 ATGGATTCACTTGGCGCCGTCAGCACTCGACTTGGGTTTGATCTTTTCAAAGAGCTGAAGAAAACAAATGATGGCAACATCTTCTTTTCCCCTGTGGGCATCTTGACTGCAATTGGCATGGTCCTCCTGGGGACCCGAGGAGCCACCGCTTCCCAGTTGGAGGAG
670 s panTro1.chr17  56243482 165 +  73346066 ATGGATTCACTTGGCGCCGTCAGCACTCGACTTGGGTTTGATCTTTTCAAAGAGCTGAAGAAAACAAATGATGGCAACATCTTCTTTTCCCCTGTGGGCATCTTGACTGCAATTGGCATGCTCCTCCTGGGGACCCGAGGAGCCACCGCTTCCCAGTTGGAGGAG
671 s mm5.chr1      106957557 165 + 195203927 ATGGACTCACTAGGCACAGCAGCCACACAGTTCCTGTTTGATCTTTTCAAAGAACTGAATAAAACAAATGATGGCAACGTCTTCTTTTCCCCTGTGGGCATCTCAACAGCCATTGGCATGATCATCCTGGGGACCCGAGGAGCCACTGCTTCTGAGTTACAGAAG
672 s rn3.chr13      13176896 165 + 111348958 ATGGACTCACTAAGCACAGCAACCACACATTTCCTGTTTGATCTTTTCAAAGAACTGAATAAAACAAGTGACGGCAATGTCTTCTTTTCTCCTTTGGGCATCTCAACAGCCATTGGCATGATCCTCTTGGGGACCCAAGGAGCCACTGCCTCTGAGTTACAGAAG
673 s canFam1.chr1  108508362 165 - 124897793 ATGGATTCACTTGGTGCAGCATACACTCACTTTGGGTTTAATCTCTTCCAAAAGCTGAATAAAATAAATGATGGCAACATCTTCTTTTCCCCTGTGGGCATTTCTGCTGCCATTGGCATGCTCATCCCAGGGGCCCGAGAAGCTACCGCCATGCAGTTGCAGAGG
674
675 a score=1700.0
676 s hg17.chr18     59455932 2 +  76117153 CT
677 s panTro1.chr17  56296086 2 +  73346066 CT
678 s mm5.chr1      106995539 2 + 195203927 TT
679 s rn3.chr13      13306377 2 + 111348958 TT
680 s canFam1.chr1  108539809 2 - 124897793 CT
681 s galGal2.chr2   67392007 2 + 147590765 TA
682 s fr1.chrUn      39424675 2 - 349519338 CT
683 s danRer1.chr20  11152772 2 +  31913010 TT
684
685 a score=2707.0
686 s hg17.chr18     59455934 3 +  76117153 ATG
687 s panTro1.chr17  56296088 3 +  73346066 ACG
688 s mm5.chr1      106995541 3 + 195203927 AAG
689 s rn3.chr13      13306379 3 + 111348958 AAG
690 s canFam1.chr1  108539811 3 - 124897793 AAG
691 s galGal2.chr2   67392009 3 + 147590765 ATG
692 s fr1.chrUn      39424677 3 - 349519338 CAG
693 s danRer1.chr20  11135889 3 +  31913010 ATG
694
695 a score=316154.0
696 s hg17.chr18     59455937 400 +  76117153 GGGATGAGAATCTGCCATAGAAGAGGATGCT-GTTGGTCTTATTTTGCCTTATGAAGAATAGGAAAGGGTGATTACAACAGAACTCTT--CATTAGTTGAAGGAGAT-GAT---------AATTCGACT-------ACTACTACAGCGGTGGCAGCTGCAGCTTCCACTCCCTCCTCAGTGACCTCCACAAAGGCCTTGTGTAGGACTTTAGATACTGAGAGACCGTGGCTCCAGGTCATGCCT-------------------------------------------------------------------------------------GAGAGGTCTGCATCCC---CATTGAAGATATTCACCATTCCCATGGTTCTCAACGTGTCCTTGAGGTCATAGCTCTC---TTCCATTTTGAACCGAGGTAAGTGTAAATCGACACATGTCT---CTCTCATATTCTGCAAACTTGTCCATTCCATCAATTTCTCAGCAGTGAGTTTCTCTTCAAG
697 s panTro1.chr17  56298740 400 +  73346066 GGGATGAGAATCTGCCATAGAAGAGGATGCT-GTTGGTCTTATTTTGCCTTATGAAGAATAGGAAAGGGTGATTACAATGGAACTCTT--CATTAGTTGAAGGAGAT-GAT---------AATTCGACT-------ACTACTACAGCGGTGGCAGCTGCAGCTTCCGCTCCCTCCTCAGTGACCTCCACAAAGGCCTTGTGTAGGACTTTAGATACCGAGAGACCGCGGCTCCCAGTCATGCCT-------------------------------------------------------------------------------------GAGAGGTCTGCATCCC---CATTGAAGATATTCACCATTCCCATGGTTCTCAACGTGTCCTTGAGGTCATAGCTCTC---TTCCATTTTGAACCGAGGTAAGTGTAAATCGACATGTGTCT---GTCTCATATTCTGCAAACTTGTCCATTCCATCAATTTCTCAGCAGTGAGTTTCTCTTCAAG
698 s mm5.chr1      106995544 391 + 195203927 GGGAAGAGATTGTGCCAAAGAAGAGGATGCT-GTTGGTCTTACTGTGCTTGACCAAT---------GGATGATCACAATAGAAATCTT--CTGTAATCTGTAAAGATAAAT---------TATGGGATT-----------TTATCCCCGTGGTAGCAGCAGCTTCTGTTCCCTCTTCATTTACCTCCACAAAGGACTTGTGTAAAACTTTAGACACCACAAGACCTTGAGTGCTGTTCATGCCA-------------------------------------------------------------------------------------GAGAAGTCAGCCTTCTGTGGATCAAAGGCGCCAACCATCCCCATGTGTTTCAATGGAACTGAGAGGTCATACTTCTC---TTCCACTTTGAACCGAGGCAAAGATAAATACAACTCGGTCA---TA