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import os,sys |
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#--------read tool_conf.xml.sample to get all the tool xml file names----------- |
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onoff = 1 |
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tool_list = [] |
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for line in open("tool_conf.xml.sample", "r"): |
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if line.find("<!--") != -1: |
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onoff = 0 |
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if line.find("file") != -1 and onoff==1: |
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strs = line.split('\"') |
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tool_list.append(strs[1]) |
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if line.find("<section") != -1 and onoff==1: |
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keys = line.strip().split('\"') |
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n = 0 |
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strtmp = "section::" |
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while n < len(keys) : |
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if keys[n].find("id") != -1 : strtmp = strtmp + keys[n+1] |
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if keys[n].find("name") != -1 : strtmp = strtmp + keys[n+1] + "-" |
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n = n + 1 |
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tool_list.append(strtmp.replace(' ', '_')) |
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if line.find("-->") != -1: |
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onoff =1 |
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|
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#-------read tool info from every tool xml file-------------------------- |
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name = [] |
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id = [] |
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desc = [] |
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tool_infos = [] |
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for tool in tool_list : |
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if tool.find("section")!=-1 : |
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tool_info = dict() |
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tool_info["id"] = tool |
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tool_infos.append(tool_info) |
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if os.path.exists("tools/"+tool) : |
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for line in open("tools/"+tool) : |
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if line.find("<tool ") != -1 and line.find("id") != -1 : |
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keys = line.strip().split('\"') |
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n = 0 |
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tool_info = dict() |
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tool_info["desc"] = '' |
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while n < len(keys) : |
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if keys[n].find("id") != -1 : tool_info["id"] = keys[n+1].replace(' ', '_') |
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if keys[n].find("name") != -1 : tool_info["name"] = keys[n+1] |
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if keys[n].find("description") != -1 : tool_info["desc"] = keys[n+1] |
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n = n + 1 |
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tool_infos.append(tool_info) |
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break |
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|
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flag=0 |
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if len(sys.argv) == 1 : |
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for tool_info in tool_infos: |
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if tool_info["id"].find("section") != -1 : |
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print "===========================================================================================================================================" |
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print "%-45s\t%-40s\t%s" % ("id", "name", tool_info["id"]) |
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print "- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -" |
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else : |
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print "%-45s\t%-40s" % (tool_info["id"], tool_info["name"]) |
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else: |
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for tool_info in tool_infos: |
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if tool_info["id"].find("section") != -1 : |
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flag=0 |
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elif flag==1: |
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print " functional.test_toolbox:TestForTool_%s" % tool_info["id"], |
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if tool_info["id"].replace('section::', '')==sys.argv[1]: |
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flag=1 |
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|
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#for key in tool_infos.keys(): |
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# print tool_infos[key]["id"], "\t", tool_infos[key]["name"], "\t", tool_infos[key]["desc"] |
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Galaxy