root/tools/filters

Name Size Rev Age Last Change
../
axt_to_concat_fasta.py 1.1 kB 1172:c591911a6497 9 months Nate Coraor <nate@bx.psu.edu>: Separate framework and tool environments. Whether running locally or via …
axt_to_concat_fasta.xml 3.2 kB 1344:4a2bdadd432b 7 months Dan Blankenberg <dan@bx.psu.edu>: Add descriptions to dynamic options filters.
axt_to_fasta.py 1.1 kB 1172:c591911a6497 9 months Nate Coraor <nate@bx.psu.edu>: Separate framework and tool environments. Whether running locally or via …
axt_to_fasta.xml 3.2 kB 1344:4a2bdadd432b 7 months Dan Blankenberg <dan@bx.psu.edu>: Add descriptions to dynamic options filters.
axt_to_lav.py 5.2 kB 1213:c347a203b94e 9 months Greg Von Kuster <greg@bx.psu.edu>: Misc tool cleanup: eliminated all references to python2.3 / python2.4, …
axt_to_lav.xml 4.1 kB 1353:4023b7b49b6e 7 months Dan Blankenberg <dan@bx.psu.edu>: Move ucsc and gbrowse data from static to tool-data/shared. Cron scripts …
axt_to_lav_code.py 250 bytes 1012:ccfcaf5e1352 10 months Greg Von Kuster <greg@bx.psu.edu>: Removed tool version directiories for some of the tools...the rest soon.
bed2gff.xml 4.2 kB 1129:cb39932ebd2f 9 months Greg Von Kuster <greg@bx.psu.edu>: Eliminated all Python2.4 references, added necessary assert statements to …
bed_to_gff_converter.py 3.0 kB 1129:cb39932ebd2f 9 months Greg Von Kuster <greg@bx.psu.edu>: Eliminated all Python2.4 references, added necessary assert statements to …
catWrapper.py 0.8 kB 1399:1f7617211b38 6 months Guruprasad Anada <gua110@bx.psu.edu>: Rewrote "convert delimiters to tab" tool in python. Modified "Concatenate …
catWrapper.xml 2.2 kB 1615:2d7f872ddaf8 2 months Greg Von Kuster <greg@bx.psu.edu>: Add functioal test baseline support for the repeat construct, more work …
changeCase.pl 1.3 kB 1170:5493d2140560 9 months Greg Von Kuster <greg@bx.psu.edu>: Enhancements to changeCase tool, user can now select columns to convert.
changeCase.xml 2.3 kB 1170:5493d2140560 9 months Greg Von Kuster <greg@bx.psu.edu>: Enhancements to changeCase tool, user can now select columns to convert.
commWrapper.pl 332 bytes 1012:ccfcaf5e1352 10 months Greg Von Kuster <greg@bx.psu.edu>: Removed tool version directiories for some of the tools...the rest soon.
commWrapper.xml 1.1 kB 1012:ccfcaf5e1352 10 months Greg Von Kuster <greg@bx.psu.edu>: Removed tool version directiories for some of the tools...the rest soon.
compare.xml 2.2 kB 1644:ab46f22b4624 1 month guru: Bug fixes for compare, Group and filter tools.
condense_characters.pl 1.6 kB 1012:ccfcaf5e1352 10 months Greg Von Kuster <greg@bx.psu.edu>: Removed tool version directiories for some of the tools...the rest soon.
condense_characters.xml 1.3 kB 1012:ccfcaf5e1352 10 months Greg Von Kuster <greg@bx.psu.edu>: Removed tool version directiories for some of the tools...the rest soon.
convert_characters.pl 1.6 kB 1012:ccfcaf5e1352 10 months Greg Von Kuster <greg@bx.psu.edu>: Removed tool version directiories for some of the tools...the rest soon.
convert_characters.py 1.0 kB 1399:1f7617211b38 6 months Guruprasad Anada <gua110@bx.psu.edu>: Rewrote "convert delimiters to tab" tool in python. Modified "Concatenate …
convert_characters.xml 2.0 kB 1399:1f7617211b38 6 months Guruprasad Anada <gua110@bx.psu.edu>: Rewrote "convert delimiters to tab" tool in python. Modified "Concatenate …
CreateInterval.pl 455 bytes 1012:ccfcaf5e1352 10 months Greg Von Kuster <greg@bx.psu.edu>: Removed tool version directiories for some of the tools...the rest soon.
CreateInterval.xml 1.7 kB 1012:ccfcaf5e1352 10 months Greg Von Kuster <greg@bx.psu.edu>: Removed tool version directiories for some of the tools...the rest soon.
cutWrapper.pl 1.1 kB 1152:938381219c9e 9 months Greg Von Kuster <greg@bx.psu.edu>: Fix for cutWrapper, should now properly parse column delimiters.
cutWrapper.xml 2.3 kB 1012:ccfcaf5e1352 10 months Greg Von Kuster <greg@bx.psu.edu>: Removed tool version directiories for some of the tools...the rest soon.
fileGrep.xml 1.7 kB 1012:ccfcaf5e1352 10 months Greg Von Kuster <greg@bx.psu.edu>: Removed tool version directiories for some of the tools...the rest soon.
fixedValueColumn.pl 0.7 kB 1012:ccfcaf5e1352 10 months Greg Von Kuster <greg@bx.psu.edu>: Removed tool version directiories for some of the tools...the rest soon.
fixedValueColumn.xml 1.5 kB 1055:2775f6eb2753 10 months Greg Von Kuster <greg@bx.psu.edu>: Corrected old directions on several tools.
gff2bed.xml 3.7 kB 1129:cb39932ebd2f 9 months Greg Von Kuster <greg@bx.psu.edu>: Eliminated all Python2.4 references, added necessary assert statements to …
gff_to_bed_converter.py 1.4 kB 1129:cb39932ebd2f 9 months Greg Von Kuster <greg@bx.psu.edu>: Eliminated all Python2.4 references, added necessary assert statements to …
grep.py 2.5 kB 1012:ccfcaf5e1352 10 months Greg Von Kuster <greg@bx.psu.edu>: Removed tool version directiories for some of the tools...the rest soon.
grep.xml 3.3 kB 1055:2775f6eb2753 10 months Greg Von Kuster <greg@bx.psu.edu>: Corrected old directions on several tools.
headWrapper.pl 449 bytes 1199:7ecf89fa2305 9 months Nate Coraor <nate@bx.psu.edu>: Fixed head/tail wrapper for Mac.
headWrapper.xml 1.2 kB 1012:ccfcaf5e1352 10 months Greg Von Kuster <greg@bx.psu.edu>: Removed tool version directiories for some of the tools...the rest soon.
join.py 12.2 kB 1356:a4ef958bd950 7 months Greg Von Kuster <greg@bx.psu.edu>: Revert 2715.
joiner2.xml 0.8 kB 1012:ccfcaf5e1352 10 months Greg Von Kuster <greg@bx.psu.edu>: Removed tool version directiories for some of the tools...the rest soon.
joiner.xml 2.9 kB 1493:e85d660c46ee 4 months Greg Von Kuster <greg@bx.psu.edu>: More fixes for twill 0.9, the annotation profiler tests do not yet pass, …
joinWrapper.pl 1.0 kB 1389:37b6f1385290 6 months Anton Nekrutenko <anton@bx.psu.edu>: long overdue join wrapper fix. Needs to be rewritten in python down the …
joinWrapper.py 1.6 kB 1509:eb941905fd70 4 months guru: Rewrote "Compare two queries" tool in Python.
lav_to_bed.py 1.6 kB 1334:0cf33730c91c 7 months Greg Von Kuster <greg@bx.psu.edu>: Cleaned up lav_to_bed a bit, added functional test. Removed old, unused …
lav_to_bed.xml 1.9 kB 1334:0cf33730c91c 7 months Greg Von Kuster <greg@bx.psu.edu>: Cleaned up lav_to_bed a bit, added functional test. Removed old, unused …
lav_to_bed_code.py 0.7 kB 1334:0cf33730c91c 7 months Greg Von Kuster <greg@bx.psu.edu>: Cleaned up lav_to_bed a bit, added functional test. Removed old, unused …
pasteWrapper.pl 0.8 kB 1012:ccfcaf5e1352 10 months Greg Von Kuster <greg@bx.psu.edu>: Removed tool version directiories for some of the tools...the rest soon.
pasteWrapper.xml 1.8 kB 1536:8ab38aa72998 3 months Dan Blankenberg <dan@bx.psu.edu>: Add a change_format tag to output datasets in tools. This allows for …
remove_beginning.pl 0.6 kB 1012:ccfcaf5e1352 10 months Greg Von Kuster <greg@bx.psu.edu>: Removed tool version directiories for some of the tools...the rest soon.
remove_beginning.xml 1.2 kB 1231:4b1ae5d9bf26 8 months Anton Nekrutenko <anton@bx.psu.edu>: More changes plus modification requested by Madelaine Gogol
sorter.py 2.5 kB 1378:612d374ed5d9 7 months Nate Coraor <nate@bx.psu.edu>: Use the more recent POSIX standard '-k 1...' option to *nix sort …
sorter.xml 2.2 kB 1231:4b1ae5d9bf26 8 months Anton Nekrutenko <anton@bx.psu.edu>: More changes plus modification requested by Madelaine Gogol
tailWrapper.pl 451 bytes 1199:7ecf89fa2305 9 months Nate Coraor <nate@bx.psu.edu>: Fixed head/tail wrapper for Mac.
tailWrapper.xml 1.2 kB 1012:ccfcaf5e1352 10 months Greg Von Kuster <greg@bx.psu.edu>: Removed tool version directiories for some of the tools...the rest soon.
ucsc_gene_bed_to_exon_bed.py 6.5 kB 1213:c347a203b94e 9 months Greg Von Kuster <greg@bx.psu.edu>: Misc tool cleanup: eliminated all references to python2.3 / python2.4, …
ucsc_gene_bed_to_exon_bed.xml 3.5 kB 1012:ccfcaf5e1352 10 months Greg Von Kuster <greg@bx.psu.edu>: Removed tool version directiories for some of the tools...the rest soon.
ucsc_gene_bed_to_intron_bed.py 3.5 kB 1213:c347a203b94e 9 months Greg Von Kuster <greg@bx.psu.edu>: Misc tool cleanup: eliminated all references to python2.3 / python2.4, …
ucsc_gene_bed_to_intron_bed.xml 2.8 kB 1012:ccfcaf5e1352 10 months Greg Von Kuster <greg@bx.psu.edu>: Removed tool version directiories for some of the tools...the rest soon.
ucsc_gene_table_to_intervals.py 4.2 kB 1213:c347a203b94e 9 months Greg Von Kuster <greg@bx.psu.edu>: Misc tool cleanup: eliminated all references to python2.3 / python2.4, …
ucsc_gene_table_to_intervals.xml 1.0 kB 1012:ccfcaf5e1352 10 months Greg Von Kuster <greg@bx.psu.edu>: Removed tool version directiories for some of the tools...the rest soon.
uniq.py 3.3 kB 1012:ccfcaf5e1352 10 months Greg Von Kuster <greg@bx.psu.edu>: Removed tool version directiories for some of the tools...the rest soon.
uniq.xml 2.2 kB 1494:d427760f8fec 4 months Greg Von Kuster <greg@bx.psu.edu>: Fix functional test for count tool and correct spelling errors in …
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