Changeset 976:8a14848f88fd

Timestamp:

02/22/08 09:57:00 (11 months ago)

Author:

Greg Von Kuster <greg@bx.psu.edu>

branch:

default

convert_revision:

svn:9bcadc22-80f8-0310-8a53-c8f022958886/galaxy/trunk@2333

Message:

Added tool version directory hierarchy for some tools in the filters tool directory.

Files:

• tool_conf.xml.main (modified) (2 diffs)
• tool_conf.xml.sample (modified) (2 diffs)
• tools/filters/BedLike2Text1/1.0.0/BedLike2Text.pl (moved) (moved from tools/filters/BedLike2Text.pl)
• tools/filters/BedLike2Text1/1.0.0/BedLike2Text.xml (moved) (moved from tools/filters/BedLike2Text.xml)
• tools/filters/Comm1/1.0.0/commWrapper.xml (moved) (moved from tools/filters/commWrapper.xml)
• tools/filters/aggTrack1/1.0.0/aggTrack.pl (moved) (moved from tools/filters/aggTrack.pl)
• tools/filters/aggTrack1/1.0.0/aggTrack.xml (moved) (moved from tools/filters/aggTrack.xml)
• tools/filters/axt_to_concat_fasta/1.0.0/axt_to_concat_fasta.py (moved) (moved from tools/filters/axt_to_concat_fasta.py)
• tools/filters/axt_to_concat_fasta/1.0.0/axt_to_concat_fasta.xml (moved) (moved from tools/filters/axt_to_concat_fasta.xml)
• tools/filters/axt_to_fasta/1.0.0/axt_to_fasta.py (moved) (moved from tools/filters/axt_to_fasta.py)
• tools/filters/axt_to_fasta/1.0.0/axt_to_fasta.xml (moved) (moved from tools/filters/axt_to_fasta.xml)
• tools/filters/axt_to_lav_1/1.0.0/axt_to_lav.py (moved) (moved from tools/filters/axt_to_lav.py)
• tools/filters/axt_to_lav_1/1.0.0/axt_to_lav.xml (moved) (moved from tools/filters/axt_to_lav.xml)
• tools/filters/axt_to_lav_1/1.0.0/axt_to_lav_code.py (moved) (moved from tools/filters/axt_to_lav_code.py)
• tools/filters/bed2gff.xml.old (deleted)
• tools/filters/bed2gff1/1.0.0/bed2gff.xml (added)
• tools/filters/bed2gff1/1.0.0/bed_to_gff_converter.py (added)
• tools/filters/bed2gff1/2.0.0/bed2gff.xml (moved) (moved from tools/filters/bed2gff.xml)
• tools/filters/bed2gff1/2.0.0/bed_to_gff_converter.py (moved) (moved from tools/filters/bed_to_gff_converter.py)
• tools/filters/bed_to_gff_converter.py.old (deleted)
• tools/filters/cat1/1.0.0/catWrapper.xml (moved) (moved from tools/filters/catWrapper.xml)
• tools/filters/cat1/1.0.0/commWrapper.pl (moved) (moved from tools/filters/commWrapper.pl)
• tools/filters/comp1/1.0.0/compare.xml (moved) (moved from tools/filters/compare.xml)
• tools/filters/comp1/1.0.0/joinWrapper.pl (moved) (moved from tools/filters/joinWrapper.pl)

tool_conf.xml.main

@@ -27 +27 @@
-    <tool file="filters/fixedValueColumn.xml" />
-    <tool file="stats/column_maker.xml" />
-
+1/1.0.0/cat
-    <tool file="filters/condense_characters.xml" />
-    <tool file="filters/convert_characters.xml" />
@@ -44 +44 @@
-  <section name="Join, Subtract and Group" id="group">
-    <tool file="filters/joiner.xml" />
-
+1/1.0.0/comp
-    <tool file="new_operations/subtract_query.xml"/>
-    <tool file="stats/grouping.xml" />   
-  </section>
-  <section name="Convert Formats" id="convert">
-
+1/2.0.0/bed2gff
-    <tool file="fasta_tools/fasta2tab/1.0.0/fasta_to_tabular.xml" />
-    <tool file="filters/gff2bed.xml" />

tool_conf.xml.sample

@@ -31 +31 @@
-    <tool file="filters/fixedValueColumn.xml" />
-    <tool file="stats/column_maker.xml" />
-
+1/1.0.0/cat
-    <tool file="filters/condense_characters.xml" />
-    <tool file="filters/convert_characters.xml" />
@@ -48 +48 @@
-  <section name="Join, Subtract and Group" id="group">
-    <tool file="filters/joiner.xml" />
-
+1/1.0.0/comp
-    <tool file="new_operations/subtract_query.xml"/>
-    <tool file="stats/grouping.xml" />   
-  </section>
-  <section name="Convert Formats" id="convert">
-
-
-
-
+/1.0.0/axt_to_concat_fasta
+/1.0.0/axt_to_fasta
+_1/1.0.0/axt_to_lav
+1/2.0.0/bed2gff
-    <tool file="fasta_tools/fasta2tab/1.0.0/fasta_to_tabular.xml" />
-    <tool file="filters/gff2bed.xml" />