root/universe_wsgi.ini.sample


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Rev Chgset Date Author Log Message
(edit) @1637:c141cb89aa45 [1637:c141cb89aa45] 11/20/08 16:15:39 Nate Coraor <nate@bx.psu.edu> Fix job recovery
(edit) @1621:45067d8114eb [1621:45067d8114eb] 11/11/08 14:48:25 Nate Coraor <nate@bx.psu.edu> Add a thread pool for the PBS runner to use for queue/finish methods.
(edit) @1606:72252f33edd1 [1606:72252f33edd1] 11/05/08 09:28:48 Greg Von Kuster <greg@bx.psu.edu> Make logging events a config setting.
(edit) @1605:f2e583f7cab9 [1605:f2e583f7cab9] 11/04/08 16:04:49 Greg Von Kuster <greg@bx.psu.edu> Add ability to track memory usage in code secments - requires config …
(edit) @1591:c4644668afff [1591:c4644668afff] 10/31/08 10:22:46 Nate Coraor <nate@bx.psu.edu> James' changes allowing the server to run w/o a job runner, …
(edit) @1430:146764b24c85 [1430:146764b24c85] 07/17/08 09:15:38 Nate Coraor <nate@bx.psu.edu> Basic $REMOTE_USER support. A database change is necessary: ALTER TABLE …
(edit) @1382:1e214f730c2d [1382:1e214f730c2d] 06/19/08 10:13:00 Greg Von Kuster <greg@bx.psu.edu> Introducing basic session security - REQUIRES DATABASE SCHEMA CHANGE and …
(edit) @1371:b772c96abe5e [1371:b772c96abe5e] 06/09/08 11:20:42 Greg Von Kuster <greg@bx.psu.edu> Requires Galaxy config change - merged former Galaxy config [datatypes] …
(edit) @1367:2328b62c0846 [1367:2328b62c0846] 06/06/08 14:52:11 Wen-Yu Chung <wychung@bx.psu.edu> Update fastq format. Now we only support FastqSolexa? variants. If the …
(edit) @1357:5a5753dbde00 [1357:5a5753dbde00] 06/04/08 12:05:43 Greg Von Kuster <greg@bx.psu.edu> Eliminate confusing double quotes in sample admin password.
(edit) @1356:a4ef958bd950 [1356:a4ef958bd950] 06/04/08 09:02:15 Greg Von Kuster <greg@bx.psu.edu> Revert 2715.
(edit) @1354:0000247a6bd8 [1354:0000247a6bd8] 06/03/08 16:29:54 Greg Von Kuster <greg@bx.psu.edu> Requires config change, temporary files are now created in a configurable …
(edit) @1340:1c3b45fb0562 [1340:1c3b45fb0562] 05/29/08 15:12:36 Greg Von Kuster <greg@bx.psu.edu> Requires config modification - Add Fastq sniffer, add support for …
(edit) @1334:0cf33730c91c [1334:0cf33730c91c] 05/28/08 15:26:42 Greg Von Kuster <greg@bx.psu.edu> Cleaned up lav_to_bed a bit, added functional test. Removed old, unused …
(edit) @1329:43015227f87d [1329:43015227f87d] 05/28/08 12:01:29 Greg Von Kuster <greg@bx.psu.edu> Requires change to Galaxy config - fixed the way the File Format select …
(edit) @1327:0244c808a973 [1327:0244c808a973] 05/27/08 15:25:54 Greg Von Kuster <greg@bx.psu.edu> Add support ( sans sniffer ) for FASTQ data type.
(edit) @1292:160bc7278171 [1292:160bc7278171] 05/12/08 14:55:48 Greg Von Kuster <greg@bx.psu.edu> Added code for integration with C. Elegans / GBrowse test server.
(edit) @1213:c347a203b94e [1213:c347a203b94e] 04/25/08 09:04:55 Greg Von Kuster <greg@bx.psu.edu> Misc tool cleanup: eliminated all references to python2.3 / python2.4, …
(edit) @1101:9afb001ae21a [1101:9afb001ae21a] 03/25/08 10:09:27 Greg Von Kuster <greg@bx.psu.edu> Changed GALAXY_DATA_INDEX_DIR from an environment variable to a config …
(edit) @1021:13d8b4560298 [1021:13d8b4560298] 03/04/08 16:55:16 Greg Von Kuster <greg@bx.psu.edu> Added new 'taxonomy' datatype to config file and registry, user can now …
(edit) @997:1fb80f8083a6 [997:1fb80f8083a6] 02/25/08 16:02:29 Wen-Yu Chung <wychung@bx.psu.edu> update qualityscore datatype. update short read tools accordingly.
(edit) @960:ee6a67f83c74 [960:ee6a67f83c74] 02/15/08 12:02:05 Nate Coraor <nate@bx.psu.edu> Just a clarification in the config file to avoid confusion.
(edit) @959:31aef7f8fff9 [959:31aef7f8fff9] 02/14/08 15:00:39 Nate Coraor <nate@bx.psu.edu> Some job runner changes, tools may now be run with a defined job runner. …
(edit) @865:4056a3c49a6d [865:4056a3c49a6d] 01/16/08 14:37:30 Greg Von Kuster <greg@bx.psu.edu> Cleaned up code for cleaning up histories and datasets, should now be …
(edit) @818:efe0d4982b6e [818:efe0d4982b6e] 12/28/07 16:34:24 Ross Lazarus <rossl@bx.psu.edu> Added additional local configuration destinations for masthead urls - …
(edit) @805:0fe2127ad5e4 [805:0fe2127ad5e4] 12/17/07 12:01:23 Chinmay Rao <chinmay@bx.psu.edu> Config files reflecting updates of EMBOSS tools to v5.0
(edit) @796:c6c8de2deb0e [796:c6c8de2deb0e] 12/14/07 16:07:11 Greg Von Kuster <greg@bx.psu.edu> Enhanced upload to handle certain binary and zip files. Cleaned up the …
(edit) @732:ea27c8afee1f [732:ea27c8afee1f] 11/09/07 11:52:02 Nate Coraor <nate@bx.psu.edu> Added the ability to "brand" Galaxy in the masthead from the ini file.
(edit) @670:7928f08e0c01 [670:7928f08e0c01] 10/11/07 16:09:25 Greg Von Kuster <greg@bx.psu.edu> Initial fix for concurrent update db issue (still using psycopg). …
(edit) @640:30b6b140b5d3 [640:30b6b140b5d3] 10/01/07 17:06:58 Greg Von Kuster <greg@bx.psu.edu> Eliminated non-text datatypes from sniff order since galaxy hinders …
(edit) @624:4e49e75880be [624:4e49e75880be] 09/27/07 10:10:16 Greg Von Kuster <greg@bx.psu.edu> Streamlined interface for supporting new data types - requires db change …
(edit) @604:d575a560ccb2 [604:d575a560ccb2] 09/18/07 11:43:44 Chinmay Rao <chinmay@bx.psu.edu> Added support for gff3 datatype
(edit) @547:6505a2c6b02a [547:6505a2c6b02a] 08/17/07 10:22:24 Greg Von Kuster <greg@bx.psu.edu> Fixes for the correlation tool.
(edit) @539:8ada065999d5 [539:8ada065999d5] 08/15/07 13:49:36 Arjun Nath <arjun@bx.psu.edu> Merged jobs/init.py and universe_wsgi.ini.sample from …
(edit) @531:60cd5f68b43f [531:60cd5f68b43f] 08/10/07 09:37:29 Greg Von Kuster <greg@bx.psu.edu> Some cleanup: changed interval.Tabular to tabular.Tabular. Fixed bug in …
(edit) @511:635e3f5fc1c6 [511:635e3f5fc1c6] 08/03/07 12:37:44 Dan Blankenberg <dan@bx.psu.edu> Add the ability for secondary (child) and new primary datasets to be …
(edit) @488:b8141a039f80 [488:b8141a039f80] 07/31/07 16:09:51 James Taylor <james@bx.psu.edu> NOTE CONFIG FILE CHANGES! First step of the big reorganization. This …
(edit) @475:c5679dc1ac32 [475:c5679dc1ac32] 07/25/07 12:38:39 Dan Blankenberg <dan@bx.psu.edu> Add Datatype level converters, based on metadata. Converters are manually …
(edit) @416:855e1968f802 [416:855e1968f802] 07/12/07 14:27:58 James Taylor <james@bx.psu.edu> Make new style work better with old layout and vice versa (so people …
(edit) @410:d064aa689bb5 [410:d064aa689bb5] 07/11/07 13:36:54 Dan Blankenberg <dan@bx.psu.edu> A bunch of changes to datatypes, including a generic interface for adding …
(edit) @365:ca454df3e52d [365:ca454df3e52d] 06/28/07 16:05:11 Greg Von Kuster <greg@bx.psu.edu> Improved implementation for displaying Galaxy files at UCSC, GBrowse, and …
(edit) @334:5e98681489d4 [334:5e98681489d4] 06/01/07 15:25:19 Dan Blankenberg <dan@bx.psu.edu> Add the ability to define datatypes in the configuration file. Datatypes …
(edit) @301:9993cb778e0f [301:9993cb778e0f] 05/25/07 16:02:51 James Taylor <james@bx.psu.edu> Use "url_for" to generate urls in as many places as I could find.
(edit) @196:7f7dddfa6bed [196:7f7dddfa6bed] 03/22/07 10:56:31 Dan Blankenberg <dan@bx.psu.edu> Add the ability to set which ucsc genome browsers to use when viewing user …
(edit) @125:3fcd0890c2ac [125:3fcd0890c2ac] 03/08/07 19:12:11 James Taylor <james@bx.psu.edu> Support for viewing the full stderr/stdout text associated with …
(edit) @79:455b23018ed7 [79:455b23018ed7] 02/13/07 16:00:18 James Taylor <james@bx.psu.edu> Support for the job "queue" reading new jobs from the database rather …
(edit) @77:7b4ac2d6ef4b [77:7b4ac2d6ef4b] 02/13/07 12:27:25 James Taylor <james@bx.psu.edu> 1) A 'prefork threaded' mixin hacked together from existing flup …
(edit) @61:0ea3beb3d755 [61:0ea3beb3d755] 01/24/07 15:48:37 Nate Coraor <nate@bx.psu.edu> Reverted changes to sample ini made by David.
(edit) @60:e7db2be7c1ff [60:e7db2be7c1ff] 01/22/07 15:28:36 David C. King <dcking@bx.psu.edu> score aggregate tool for .wig files
(edit) @3:03c96c39f50e [3:03c96c39f50e] 11/15/06 11:55:17 James Taylor <james@bx.psu.edu> Cleaning everything up (should be working as usual)
(add) @0:ae898a17920b [0:ae898a17920b] 11/15/06 11:28:21 James Taylor <james@bx.psu.edu> Moving james-wsgi branch to new trunk.
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