August 25

Next meeting: September 8th (1:00 pm Wartik 501)

Ross, Kateryna, and Izabella cited the following problems:

  • Operations don't work whe UCSC is down
  • Pages do not refresh
  • Galaxy does not correctly recognize Mac line breaks
  • Galaxy experiences problems when bed records contain # signs

Assignments

  • Anton - documentation, grant prepartion.
  • Dan - 1. Finish new phylip. 2. fasta2maf
  • David - 1. Get descriptive stats working. 2. Score aggregation with James
  • Ian - Implement wrappers for sort, grep, uniq
  • Istvan - 1. Edit UCSC interface (remove links. Make Galaxy to recognize when UCSC cuts the data at 100,000). 2. Connect to Ensmart
  • James - 1. Framework issues (tool parametrs depend on available builds?). 2. Score aggregation with David.
  • Yi - 1. Making galaxyOps to use local chromosome info. 2. Finish implementing binned-bitsets for galaxyOps .

Next Meeting

  • More discussion of data formats
  • Allow people of upload data from a url
  • More of mafs:
    • bed/maf intersection
    • align extraction for mafs