Galaxy Screencasts and Demos

We are currently modifying our screencast service. The new site is available at http://galaxy.psu.edu/screencasts.html

For supplementary screencasts for Galaxy publications scroll down to the bottom of this page.

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• To view screencasts download QuickTime player.
• In some parts of the world bandwidth may be insufficient to download screencasts. Send e-mail to galaxy-bugs and we will send you a CD.
• You might want to use headphones with these screencasts.

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1. Interface

• DownloadStream Screencast 1.1 - Introduction to Galaxy interface (3 min 54 sec | 20 MB)

2. Tool tutorials

• Download|Stream Screencast 2.1 - Getting Data (4 min 38 sec | 37 MB)
• Download|Stream Screencast 2.2 - Getting ENCODE data (2 min 01 sec | 16 MB)
• Download|Stream Screencast 2.3 - Text Manipulations (3 min 48 sec | 19 MB)
• Download|Stream Screencast 2.4 - Filtering, Sorting, Joining and Comparing (7 min 22 sec | 63 MB)
• Download|Stream Screencast 2.5 - Fetch Multiple Alignments for Genomic Locations (6 min 28 sec | 48 MB)
• Download|Stream Screencast 2.6 - Filter Multiple Alignments and Convert Formats (7 min 06 sec | 25 MB)
• Download|Stream Screencast 2.7 - Getting Genomic Scores (3 min 26 sec | 26 MB)

3. Interval Operation Tutorial (also see GopsDesc)

• Download|Stream Screencast 3.1 - Preparing data (2 min 01 sec | 8 MB)
• Download|Stream Screencast 3.2 - Intersect and Subtract (7 min 40 sec | 28 MB)
• Download|Stream Screencast 3.3 - Merge and Concatenate (6 min 23 sec | 41 MB)
• Download|Stream Screencast 3.4 - Base coverage and Complement (2 min 05 sec | 4 MB)
• Download|Stream Screencast 3.5 - Coverage (2 min 14 sec | 14 MB)
• Download|Stream Screencast 3.6 - Cluster (6 min 44 sec | 30 MB)
• Download|Stream Screencast 3.7 - Join (3 min 36 sec | 36 MB)

4. Examples of complex analyses: Finding and analyzing Non-Gencode ESTs

• Download|Stream Screencast 4.1 - Finding NonGencode ESTs Part A (6 min 51 sec | 54 MB)
  • EST file
  • Annotated Genes file
  • Annotated Exons file
• Download|Stream Screencast 4.2 - Finding NonGencode ESTs Part B (3 min 48 sec | 32 MB)
  • Intronic ESTs
  • InterGenic ESTs
  • InterTwined ESTs
• Download|Stream Screencast 4.3 - Looking for protein-coding transcripts among Non-Gencode ESTs (4 min 48 sec | 56 MB)
• Download|Stream Screencast 4.4 - Finding Non-Gencode ESTs under purifying selection (3 min 28 sec | 29 MB)

5. Developers How To

• Download|Stream Screencast 5.1 - How to install Galaxy on your machine (3 min 23 sec | 28 MB)
• Download|Stream Screencast 5.2 - How to add tool to Galaxy (8 min 52 sec | 29 MB)

6. Interactions between UCSC and Galaxy

• Download|Stream Screencast 6.1 - Getting data from UCSC Table Browser and displaying data in UCSC Genome Browser
• Download|Stream Screencast 6.2 - How you can use Galaxy to display custom track at UCSC Genome Browser

7. Future

• Download|Stream Screencast 7.1 - Prototype: Visualizing alignments with Galaxy and GMAJ

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Supplementary Screencasts for Galaxy publications and Conferences

• Galaxy2ENCODE - A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly (Genome Research 2007)
• Current Protocols in BioInformatics - Galaxy: Interactive Analyses of Genomic Data by Example
• ASHG2007 Example - Finding human exons with >= 5 Non-synonymous SNPs
• Bringing genome scale data within the reach of experimental biologists
• Screencasts detailing analysis of data generated by Affymetrix tiling arrays

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